Lingula anatina: 106161153
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Entry
106161153 CDS
T04921
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lak
Lingula anatina
Pathway
lak03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106161153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lak03041
]
106161153
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106161153
Spliceosome [BR:
lak03041
]
Complex C
Other components
Step II factors
106161153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
ResIII
T2SSE
Sigma54_activ_2
AAA_16
AAA_30
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
106161153
NCBI-ProteinID:
XP_013393477
UniProt:
A0A1S3I5D7
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MPKIKYDHDDEDGSVHRLEGSDVNQQGGLIIMKKGPSADSGEKHSFKPPLIKGSLLGLDR
LAADKRKTRDEEEEGGYKRSKVTSYKNDEDNDEDIEEEDAGRGSHKPPKDRHYRPARMET
PSHPGGVNEEVRSKIQHRHKERERGVYASSKDKEKRRDKDRDRKRDHDRRYDKERSERGH
RSERSQRSEREWEETPSRSRDEPPTPARYKPKDTPSGSSWDDDDITPPQKSVWDVPTPYR
SERRGDRDRSDRSDRSDRSDRSHRSQRSSRDGRKHDRKSRKKTDDTPLPTPSYKYNDWMD
DRKKIRYTPRERDNRDEEGWRKDLTEEERLEMEEEQKRLDREWYMQDEGYDESHNPFSGM
SAEYTKKKEQEIEKKKVKRMSEKQRQINKDIEMWETNRMLRSGVIQKVNFDEDFEEDNEA
RVHILVHNIVPPFLDGRMVFTKQPEPVIPIKDPTSDMAQVARKGCHVVRHHREEKEKKKA
QQKHWELAGTRMGDIMGVKKKEEEDKDIDEEGNLDWKKNQKFSDHMGDSSQAVSEFAKKK
NIRQQRQYLPIYAVRNELLNIIRDNSIVVIVGETGSGKTTQLTQYLHEDGYTKFGMVGCT
QPRRVAAMSVAKRVSEEMGSKLGDEVGYAIRFEDCTSEKTIIKYMTDGILLRESLRESDL
DNYSAIIMDEAHERSLNTDVLFGLLREVVARRQDLKLIVTSATMDATKFSTFFGNVPVYI
IPGRTFPVDIFFSKNTVEDYVDAAVKQALQVHLMGNPGDILIFMPGQEDIEVTCELLAER
LDELDEAPPLAILPIYSQLPSDLQAKIFQKAPDGIRKAVVATNIAETSLTVDGIQFVVDA
GFCKLKVFNPKIGMDALSVFPISQANANQRSGSHTHTHTHCFRLYTERQYKDELLVTTVP
EIQRTNLANVVLLLKSLGVQNLLQFHFMDPPPQDNILNSMYQLWVLGALDNTGSLTSLGR
QMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFFRPKGREEDSDSAREKFQVP
ESDHLTFLNVYLQWKRNNYSSSWCQEHFVHVKAMRKVREVRQQLKEIMDQQKMDFVSCGQ
EWDIIRKCICSSYFHQAARMKGLGEYVNMRTGMPCHLHPTSALFGMGYTPDYIVYHELIM
TSKEYMQCVTAVDGHWLAELGPMFYSVKESSKTRNENRQKEAADMTAMEEEMKKAEEQIK
LRKEEQEKALVDTSKRNQIVTPGRKEPGTPFTPRRPRSKIGI
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaataaaatacgatcacgatgatgaagatgggtcagttcatcggctggaagga
tcggacgtaaaccaacaaggtggactgataatcatgaaaaaaggtccctctgccgattct
ggagaaaagcattcatttaaaccaccactcatcaaaggctctttgctcggccttgacaga
ctagctgccgataagaggaaaacaagggacgaagaagaggaaggtggttacaaacgttct
aaagttacatcttataaaaatgatgaagacaatgatgaagacatagaggaggaggatgct
ggtagagggagccataaacctcccaaagacagacattatcgcccagccagaatggagaca
ccatcacatcctggaggagtcaatgaagaagtaaggtcaaaaattcaacacagacacaag
gagagggagcgtggagtgtacgcctcatccaaagataaagaaaaaaggagagacaaagac
agagatcgtaagagggaccatgatcgtaggtacgataaagagagatcagaaagaggtcac
aggagtgaaaggagtcagaggagtgagagagagtgggaagaaacgccgtctagaagtcga
gatgaacctcctactccagccagatacaaacctaaggatactccatcaggatcaagctgg
gatgatgatgacatcactccccctcagaagtctgtgtgggatgtccccacaccatacagg
tcagaacgcagaggtgaccgcgacagaagtgaccgaagtgacaggagtgacagaagtgac
aggagtcacagaagtcaaagatcgtccagggatgggagaaaacatgacagaaagtcaagg
aagaagactgatgacaccccgcttcccacgccttcttacaagtacaatgactggatggat
gacaggaaaaagatccgttacacacccagggagagagataacagagatgaggagggttgg
aggaaagacttgactgaagaagaacgcttagaaatggaggaagagcagaagcgtttagat
cgtgagtggtacatgcaagacgagggttatgacgagtcccataatccattctctggcatg
tcagccgagtataccaagaaaaaggaacaggaaattgagaagaaaaaggtcaagaggatg
tctgagaaacagaggcagataaataaggacatagagatgtgggaaaccaacagaatgctg
agaagtggcgttatccagaaagtgaattttgatgaagacttcgaggaggacaatgaagct
cgggttcacatcctggtccacaacattgtccccccattcctggatggcagaatggtgttc
acaaagcaaccagagcctgtgatacccatcaaggaccctacatcagacatggcccaggtg
gccagaaaaggctgccatgttgtccgccaccacagagaggagaaagagaagaagaaagct
cagcaaaaacactgggagctggcagggaccaggatgggggacattatgggggtcaaaaag
aaagaggaagaggataaagatatagatgaagaggggaacttggactggaagaagaatcaa
aaattttctgaccacatgggagattcctcccaggcagttagtgaatttgctaaaaagaaa
aatattcgacaacaaaggcagtaccttcctatatatgctgtaaggaatgagctactgaat
atcatcagggataacagtatagttgtgatagtgggtgagactggctcaggtaaaactaca
cagctgacgcagtatcttcatgaagacggatacaccaagtttggcatggtgggctgcaca
caacctcgtcgagtggcagccatgtctgtcgccaaacgagtctcggaagagatggggagt
aagctcggggatgaagtggggtatgctattcgatttgaggattgtacctcggagaaaaca
attatcaagtacatgacagatggtatactgctgagagaatcactacgcgagtctgaccta
gataactacagtgcaatcatcatggatgaagctcacgaacggtcgctaaatactgatgtc
ttgtttggtttactgagggaggttgttgctaggcgacaggatctcaagttaatcgtcacc
tcagccaccatggatgccaccaaattctccaccttcttcggcaacgtcccggtgtacata
atacctggcaggacattccctgtggacatcttctttagcaagaatacagtggaggactac
gtggacgcagcggtcaagcaggccttgcaggtccacctgatgggtaacccaggtgacata
ttgatcttcatgcctggccaagaggacattgaggtgacatgtgaactgctggcagagcgt
cttgatgagcttgatgaggcgcccccattggccatcttgcccatctactcccagctgccc
agtgatctccaggccaagatcttccagaaggccccagatgggatcaggaaagctgtggtg
gccaccaatatagccgagacctccctcacagtggatggtatacagtttgtggtagatgct
ggtttctgcaagctgaaggtgttcaaccctaagattggtatggacgctctctctgtgttc
cccattagtcaggccaatgccaaccagaggtcaggntctcacacacacacacacacacac
tgcttcagactgtacacagagcgccagtacaaggatgagctgctggtgaccacagtgcca
gagatccagagaaccaacctggccaatgtggtgctcctgctcaagtccctgggggtgcag
aatctcttacagttccacttcatggatccacctccacaggataacatcctgaactccatg
taccagctgtgggttttgggagcgctggacaacacgggttccctgacgtccctgggcaga
cagatggtggagttccctctggaccccgcgctgtccaagatgttgattgtctcctgtgat
atgggctgcagtgcagatatactgatcatagtgtccatgttatctgtcccagccattttc
ttcagaccaaaaggaagggaagaagactcggattctgccagagaaaagtttcaggttcca
gagagtgaccatttgacctttctcaatgtctatctgcagtggaagagaaataactattcc
tccagctggtgtcaggaacactttgtccatgtcaaggcaatgaggaaggtccgtgaggtg
cgtcaacagctgaaggagataatggaccagcagaagatggactttgtgtcctgtggccag
gagtgggatatcatccggaagtgtatctgttcatcctacttccatcaggcagcaaggatg
aagggtcttggtgaatatgtcaacatgaggacagggatgccgtgtcacctgcaccccacc
agtgcactgtttggcatgggttatactccagactacatagtctaccatgaactgatcatg
acatccaaggaatacatgcagtgtgtgactgctgtggatggacactggctagctgaactg
ggaccaatgttttatagtgtcaaagaatcatctaagacaagaaatgaaaaccgccagaag
gaagcagcggacatgactgccatggaggaagagatgaagaaagccgaggagcagattaaa
ttgaggaaggaagagcaagagaaggctttggttgatacaagtaaaagaaaccaaattgtc
accccaggaagaaaagaaccaggtactccatttacccccagaagaccaaggtccaagata
ggaatttga
DBGET
integrated database retrieval system
