Lingula anatina: 106161202
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Entry
106161202 CDS
T04921
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lak
Lingula anatina
Pathway
lak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106161202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lak03019
]
106161202
03041 Spliceosome [BR:
lak03041
]
106161202
03009 Ribosome biogenesis [BR:
lak03009
]
106161202
03016 Transfer RNA biogenesis [BR:
lak03016
]
106161202
Enzymes [BR:
lak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106161202
Messenger RNA biogenesis [BR:
lak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106161202
Spliceosome [BR:
lak03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106161202
Complex C
U4/U6.U5 tri-SnRNP related factors
106161202
Ribosome biogenesis [BR:
lak03009
]
Eukaryotic type
Pre-60S particles
Helicases
106161202
Transfer RNA biogenesis [BR:
lak03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106161202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
106161202
NCBI-ProteinID:
XP_013393538
UniProt:
A0A1S3I5P2
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MDFGDDLFSVFEESGRQSKASEDEKANPNNSGPKEADKDQKKKAQELLQKGKRTLERLEI
ETENPDGVKKSKTDLLADINQSETMAARIQIHKVDTVEACLHEVAIPPEAVYVPLKTPTG
KPAKEYPFILDPFQKEALLCLENTESVLVSAHTSAGKTVVAEYAIAMSLSKKQRVIYTTP
IKALSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVV
FDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICWLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDETGVFREENFNSAMAVLRDSGDAAKGDQKGRRGGQKG
ESNCFKIVKMIMERNFAPVIVFSFSKKDCEGYALQMSKLDFNTTEEKKLVEEVFNNAIDA
LSDEDKKLPQVEHVLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLN
MPARTVLFTNARKFDGKDYRWLTSGEYIQMSGRAGRRGLDERGIVILMMDEKMAPSAAKN
VVKGQPDALNSAFRLTYNMVLNLLRVEEINPEYMLERSFYQFQNYSAIPEMYEKLKKLET
QYNSITMEREDEVAGYYRIRQQLANLEKELQNYIHKPQYLLPFLQPGRMVKVKNGEDDFG
WGIVVNFHKKANQSKNPTDMEPLYVVEVLANLTKESAKSGNSAAIKPCPPGEKGEMQVIP
VLSHLVTAVSSVRLYFPSDLRPLDNRQSVGKSIQEVMKRFPKGIPLLDPIEDMQIKDKGL
KEVVKKIEAFEHRMYSHSLHGKPELDKLYTEYESKMKIASEIKVAKVELKKKKSLLQMDE
LKCRKRVLRRLGYATAADVIEMKGRVACEISSADELLLTELLFNGSFNELTAAQVASLLS
CLVFQENSSEMPKLTDELTGPLRQMQDGARRIAKVSNEAKLTLDEEEYVGSIKPQMMDVV
HAWCNGNSFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFADGIKSI
KRDIVFAASLYL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggattttggagatgatttgtttagtgttttcgaggaaagcggtcgtcagtcaaaggcg
tctgaagatgaaaaagcaaatccgaataacagtggaccaaaagaagctgacaaagaccaa
aaaaagaaagcacaagaattactgcaaaagggaaagaggactttagaaagactggaaata
gaaacagaaaaccccgatggagtcaaaaaatcaaaaacagatcttttggctgatattaac
caatcagaaaccatggcagctagaatacagattcacaaggtggatacagttgaagcttgc
ttacatgaggttgcaattccaccagaggcagtgtatgtgcctctgaagacccctactggg
aagccagccaaggagtacccctttatcctggatccttttcagaaagaagctttgttgtgt
ttggagaatacagaatctgtattggtttctgctcatacgtctgcaggaaaaactgtggtt
gcagaatatgccatagccatgtctttgtcaaagaaacagagagtaatctacaccacacca
attaaagctctcagcaatcagaagtacagggaattgtttgaagagtttcaggacgttggt
ttgatgactggggatgtcactatcaaccccactgccagctgtcttgtcatgaccacagag
attttgcgaagcatgttgtatcgtggttctgaagtaatgagagaggtggcgtgggttgtc
tttgatgaaattcattatatgagagacaaagagcgaggagtggtctgggaagaaaccatt
atcttattacctgacaacgtgcactatgtcttcttatctgccacaatccctaatgctagg
cagtttgcagagtggatttgctggcttcataaacaaccctgtcatgtagtgtacacagac
tatcggcccacaccactacagcattatatatttcctgcaggaggagatggcttgcatctg
gtggtggatgagaccggtgtatttcgagaagaaaatttcaacagtgcaatggctgtactg
agggactcaggagatgctgctaagggagatcagaaagggaggcgtggagggcagaagggt
gaatccaattgcttcaagatagtgaagatgattatggagaggaactttgccccggttata
gtattcagtttcagtaaaaaagattgtgaaggctatgcattacagatgtccaagctggat
tttaacacaactgaagagaaaaagttggtagaagaggtgttcaacaatgccatagatgca
ttatcagatgaagacaaaaagctgcctcaggtggagcacgttcttcctcttttaaaaaag
ggggttggtatacatcattctgggcttcttcctcttctcaaggaaactattgaaattctc
ttctcagaaggactaatcaaggctctgtttgctacagagacatttgccatgggtttgaat
atgcctgccagaactgtgcttttcacaaatgcaagaaagtttgatggcaaagactataga
tggcttacttctggtgaatatatccagatgagtggtagggcaggtagacgagggttagat
gagaggggaatagttatcctcatgatggatgaaaagatggctcctagtgcagctaaaaat
gtggtgaagggccagcctgatgccttgaacagtgcgttccgtctgacctacaacatggtg
ctcaacctgctgcgtgtggaggagatcaacccagagtacatgctggagaggtccttctat
cagtttcaaaactactctgctataccagagatgtatgaaaaattaaagaaattggagaca
cagtacaatagcataacaatggagagggaagatgaggtggctgggtactacagaattagg
cagcagcttgctaacttggagaaggaattacagaattacatccacaaaccacaatacctt
ctaccctttttacaacctgggaggatggtaaaggtgaaaaatggggaggatgactttggc
tggggcattgttgtcaactttcataaaaaagcaaatcagagcaagaaccccacagacatg
gagcccctgtatgtggtggaggtgctggccaatcttaccaaggagagtgccaagtctggc
aatagtgctgccatcaaaccatgtccacctggagagaagggagaaatgcaggttattcct
gtgctgagccatttagtcactgcagtaagctcagttcgcctgtactttccatcagacctc
aggccattagataacaggcaaagtgtaggaaagtctattcaggaggtcatgaaaagattc
cctaagggcatcccattgctcgatcccatagaagacatgcagatcaaggacaaaggtctc
aaagaagttgttaaaaaaattgaagcatttgagcacaggatgtattcccattcattacat
ggcaagccagaattggacaaactctacacagaatatgaaagcaaaatgaagattgctagt
gagatcaaggtggctaaggtagaactgaaaaagaagaagtcacttctccagatggatgaa
cttaaatgtagaaagagggtgctgaggaggttagggtatgccactgctgctgatgttatt
gaaatgaaagggagggtggcttgtgaaataagcagtgctgatgagctgctcttaacagaa
ctgcttttcaatggctcctttaatgagctcacagcagcacaagtagcatctcttcttagc
tgtctagttttccaagaaaattcctcagaaatgcccaagctcacggatgagctcactggc
cctctgagacaaatgcaggatggagcaaggaggatagccaaagtaagcaatgaggctaaa
ctgactttagatgaagaagaatatgttggcagcataaaaccccaaatgatggatgtggtc
catgcatggtgtaatggaaattcatttgcacagatttgtaaaatgactgatgtgtttgaa
ggcagcattattagatgcatgagaagattagaagagcttctgcgtcagatgtgccaagca
gctaaagctatagggaacaccgaacttgagaataaatttgctgatggtatcaagagcatc
aagagagacattgtgtttgctgcaagtctgtatctatag
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