Lingula anatina: 106169599
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Entry
106169599 CDS
T04921
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lak
Lingula anatina
Pathway
lak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106169599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lak03000
]
106169599
03019 Messenger RNA biogenesis [BR:
lak03019
]
106169599
04121 Ubiquitin system [BR:
lak04121
]
106169599
Enzymes [BR:
lak01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106169599
Transcription factors [BR:
lak03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106169599
Messenger RNA biogenesis [BR:
lak03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106169599
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106169599
Ubiquitin system [BR:
lak04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106169599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-UDP
Vasculin
zf-CCCH_2
Torus
zf-C3HC4_2
Nup35_RRM_2
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
106169599
NCBI-ProteinID:
XP_013404553
UniProt:
A0A1S3J2T0
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MSVGEEAVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKQYPEDP
AEFKPLTEDELQRIRKERRQKDLQRKQKAAENRRHLANVRVVQKNLVFVVGLSQRLAEPE
VLKKHEYFGKFGKIIKVVINQSTSYAGAQGPSASAYVTYLKPEDALRAIQTVNNVHVDGR
TLKASLGTTKYCSHFLKGTQCPKPDCMYLHELGEEAASFTKEEMQQGKHQEYEQKLHEGY
LNSINAAQQATVGKVQPAATGQQSRKKTVSPTALTQPSSTQSAPTNPPPNSTCKDAWPSL
HSTAKPERLTNGNKSSSTQASENLVDSPPPAPSPTQNKAPGNHRRKPSNENNESKSKDSV
GQKDIPSKQSSPPSQMPPHPHPHPQLSLGAARKLPFGQSDSLSLFTNSGGFSSNRNPKPQ
LPSQHTDSVPTTEIPETIAVSSSTDWSAAFGFSSSSAATNDDDLGFDPWDESSKALADLI
QIETALKVPHTAPPQQGQFIPPQPTAVRSLPPGFAPQHYGMPGKLDPNGSRMLGLMQLPI
QTPLSHPFSGTVPEMAAGAPANRDHVNGNKNTGDAFSKDFQDGLRALLPNINISFGAPQQ
PQQTRTTQQPRPQQQQQQQQQQQHNNWRESSASSQDLSWLGSDPAIVTSGKITTSDVLSE
SPPHWMKSLHQLTEIESSPNHNHRLPFVQQFPFRAPQVWPPQVQTPPPGFQTQLRPPAQF
TEQQQLTEGLQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttggagaagaagcagttgagtgtcctctgtgtatggaacctctggagattgat
gacattaactttttcccttgcacctgtggttatcagatttgtcgtttttgttggcatcgt
atcagaacagatgaaaatggtctgtgccctgcttgcagaaagcaatacccagaagaccct
gcagaattcaaacctttgacagaagatgagttgcaaaggatcaggaaagaaagacgccag
aaagaccttcagcgcaaacaaaaagcagcagaaaacagaagacacttggcaaatgtcaga
gttgtgcagaagaatcttgtttttgttgttggcctttcccagaggctagcagagccagag
gttcttaaaaagcatgaatattttggaaaatttggaaagatcattaaagtggtgatcaat
caaagtacttcatatgcaggagcgcagggtcctagtgcaagtgcgtatgtgacatatctc
aaaccagaggatgctttaagagccatacagaccgtgaacaatgtgcatgttgatgggagg
acactgaaagcttctttggggacaactaaatattgtagtcacttcctaaaagggacacaa
tgtcccaagccggactgcatgtatttacatgaacttggggaggaagctgcgagttttacc
aaagaagaaatgcaacaaggaaaacatcaagagtatgaacaaaagttacatgaaggctac
ttgaatagtatcaatgctgctcaacaggctactgtagggaaagtgcaaccagctgcaaca
ggacagcaaagcagaaagaagactgtgtccccaacagcactgacgcagccatcttctacc
cagtcagcacccacaaatcccccaccaaattcaacttgcaaagatgcttggccttcacta
cacagtacagccaaaccagagcgtcttacgaatggcaataaatctagttctacacaggct
tcagaaaaccttgttgactctcctcctcctgctccttcaccaacacagaacaaagctcct
gggaatcatagaagaaaaccgtcaaatgaaaataatgaaagtaaatctaaagacagtgta
ggccaaaaagatataccatcaaagcagtcgtcacccccctcacagatgcccccacacccc
cacccacacccccagttgtctctgggagctgccagaaaattgccttttggacagtctgac
agtctgtccctgtttacaaacagtggtggcttttcttcaaacagaaaccccaaaccacag
ttaccatcacaacacacagactctgtacccacaacagaaatacccgagacaattgcagtt
tcaagttcaacagactggagtgcagcttttggtttttcttcctcttctgcagcgacaaat
gatgatgatctaggtttcgatccgtgggatgagtcatccaaagctcttgcagacctgata
cagatagaaacggctctgaaagttcctcatacagcaccccctcagcagggacagttcatc
cccccacagccaacagcagttagaagtcttccaccagggtttgcccctcaacattatggc
atgcctggaaaattagatcctaatggtagtagaatgctgggtctaatgcagttgcctatt
caaacccctctgtcacacccatttagtgggacagtacctgagatggctgcaggggcacca
gctaacagagatcatgtgaatggaaacaaaaatacaggtgatgcattcagcaaagacttt
caagatggacttagagcattattaccaaatatcaatataagttttggtgctccacaacaa
ccacaacagactcgaaccacacaacaacccaggccacaacaacagcaacaacaacaacaa
caacaacaacataacaattggcgagaatcctctgcatcctctcaagatttatcttggtta
ggatccgacccagctatagtcacatctggtaaaattaccaccagtgatgttttatctgag
agtccaccacactggatgaaatctctccaccagttaacagagatagagtcctctcctaat
cataatcacagattgccatttgtacaacagtttcccttcagagccccccaggtgtggccc
ccccaggtgcagactccacccccaggttttcagacccaactcagacccccagcacagttt
acagaacagcagcagttgacagaaggacttcaatga
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