Lingula anatina: 106171879
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Entry
106171879 CDS
T04921
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lak
Lingula anatina
Pathway
lak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106171879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lak03019
]
106171879
Enzymes [BR:
lak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106171879
Messenger RNA biogenesis [BR:
lak03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106171879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
US30
RRM_1
Motif
Other DBs
NCBI-GeneID:
106171879
NCBI-ProteinID:
XP_013407872
UniProt:
A0A1S3JBU0
LinkDB
All DBs
Position
Unknown
AA seq
607 aa
AA seq
DB search
MEVTRSNFRESLPTISSAISKASFLAIDGEFTGLQKGVNLHAFDTPNERYQKLRQGSMDF
LLMQFGLCAFEYEATTKRHIIRAFNFYLFPKPFSRQAPDVCFSCQSSSIDFLVSQGFDFN
KLFREGIPYLTPAEEQKSRDALESKYNQLDVMSSPAFTSPTGADTAVAKGPIEIPSEHKQ
YVEDICKQVEELTAEGNTSQTLELKPTSAFQRKLVYQTLKLKFHAGLHLETKTNNNRQRY
IVISKVKNAEDQKQKEESRKAAEMEELENAVGFSKVIRMISQSGKLVVGHNMMLDVLHVL
HQFSCPLPESYEDFKSLTRCVFPRLLDTKLMSSTHPFKDWIISTTLGDLRKLLENKPFEK
PVVESAEGFPAYTTDHEQLHEAGYDAFITGLCFIGMSKYLGTFQSPKKEHIPPSSPLIEP
FLNKLFMFRVQDIPYMNLAGPDLQPSRDHVFHLSFPKEWKTSDISQLFAPFGNVYIGWLD
DNSAFVSLYKKDEADRVLQNITTGDTFSVVAYKDFIERMQKSSSRKHNIPASDLDLPVKK
RQSSSPLNVNASPFQSTRSITPIPEEMEEENNGTVNMDDLGEPLAKRMKTDCKSGSEKKL
FDEPENW
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaagttacgcgaagcaatttcagagagtcattaccaacaatctccagtgccattagc
aaagcatccttcctggcaatagatggagaattcacaggactacaaaaaggagtgaatctt
catgcatttgacaccccaaatgaaagataccaaaagctacgacaagggtctatggatttc
ctacttatgcagtttggcctttgtgcatttgaatatgaagctacaacaaagagacacatc
atcagagcattcaacttctacttatttccaaagccattcagcaggcaggctccagacgtg
tgcttctcatgtcagagttctagtattgattttttggtgtctcagggatttgattttaac
aaattgttcagagaaggcattccatacttgaccccagcagaagagcagaagtcccgtgat
gcactggaatcaaagtacaaccaactcgatgtgatgtcttcccctgctttcaccagtccc
actggggccgacactgctgtagccaaaggtcccatagagatccccagtgagcataaacaa
tatgtggaggacatttgtaagcaagttgaagagttgacagcagaaggaaacacctcacaa
acattagaactcaagccaaccagtgcatttcaaagaaaattggtgtatcagacattaaag
ctaaagtttcatgcaggtctgcacctagaaactaaaacaaataataacaggcaaaggtat
atagtcatctccaaagttaagaatgcagaagaccagaaacaaaaagaagaaagcaggaag
gcagcagaaatggaggagttggagaatgctgttgggttttcaaaagtaatccgtatgatc
tcccagtctggcaagcttgttgtgggtcataatatgatgctggacgttttacatgtactg
catcagttcagttgccccttaccagagagttatgaagattttaaatctctaacaagatgt
gtgtttccaaggttactggatactaaactcatgtctagcacccatccattcaaagattgg
atcatcagcactactcttggagacctgcgcaaattattggaaaacaaaccatttgaaaaa
cctgttgttgagagtgcagaaggttttcctgcttataccactgaccatgaacagctccat
gaagctggttatgatgcatttatcacaggcctgtgttttattggaatgtccaaatatcta
ggcacttttcagtcaccaaaaaaagagcatatacctccatcatcacccctaatagagccc
tttctaaacaagttattcatgttccgagtacaagacattccttacatgaatctggcagga
cctgatttacagccaagccgagatcatgtgttccacttgtcattcccaaaagaatggaag
acgtctgacatttctcagctctttgctccctttgggaatgtttacattggttggctggat
gataactctgcctttgtttctctgtacaaaaaggatgaagctgacagagtgctacagaac
ataaccactggagacaccttcagtgttgttgcttacaaagatttcatcgagagaatgcag
aagtcttcatccagaaagcataacataccagcatctgacttggatttacctgtgaagaag
aggcagtcttccagtccactgaatgtgaatgcgtcccccttccagtccacccgtagcatc
actcctattccagaggagatggaagaagaaaacaatggtactgtcaacatggacgattta
ggtgaacctttggccaagagaatgaagactgactgcaaaagtggttcagagaagaaattg
tttgatgagccagaaaactggtga
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