KEGG   Lingula anatina: 106180262
Entry
106180262         CDS       T04921                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lak  Lingula anatina
Pathway
lak03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106180262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lak03021]
    106180262
   03036 Chromosome and associated proteins [BR:lak03036]
    106180262
Transcription machinery [BR:lak03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106180262
   Coactivators
    SAGA/TFTC/STAGA complex
     106180262
Chromosome and associated proteins [BR:lak03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     106180262
    STAGA complex
     106180262
    TFTC complex
     106180262
    SAGA complex
     106180262
    SLIK complex
     106180262
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 TFIID_NTD2 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_Vps41 WD40_RFWD3 WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_NWD2_C WDR54 WD40_like PEP5_VPS11_N Mala_s_1-like Beta-prop_WDR75_2nd DUF900
Other DBs
NCBI-GeneID: 106180262
NCBI-ProteinID: XP_013419666
UniProt: A0A1S3KBN4
LinkDB
Position
Unknown
AA seq 535 aa
MKRVRSEQINSYVGHYLKRRQFKGDSEHINKKDLKVQQTIEEMSLHEACNAAVGVDSSFS
FSSITGDATACDQQYVRFRTFIQDSVEPYRTDLLLLLYPVFVHVYLELICNGHKTPAHKF
YSRHHSYFLENSEYRMIVEALAQLFHKEDVYSNDYIRKFREDKFKVVLSEDALQYLFRYL
KNEDNMIMLQIFNHHIHIKVKMPTDVELDLQDFVNFHDLVLPSAPDTPQNKVIRNEVSLS
SLQQSIQKVRDGAPCLTSILFYTFLNTHQGLCCTSISPNEALICGGFEENSIKIWSLTPS
KLHPKKAVVRTDRITMVGDYLEDVEEKECSRTRPNEVITMRAHSGSVYGTAFTADSKYLL
SCSEDKSVRLWDLDTYNNVALYRGHSYAVWDIDTSPSGSFFASCSHDRTVKLWAVDRTYP
LRTFVGHTMDVDCVKFHPNCNYVATGSGDKSVRLWSVQEGKCVRLMQGHRGSIYSLAFSP
DGQMLASAGEDRRIRVWDLGTGSIIKELRGHTDIVHSLCFNRESSMLASGMFIFS
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgaaacgagttagaagtgaacaaattaatagctatgtaggtcattatttgaaaagacga
caatttaagggagacagtgaacatataaataagaaagacctgaaagtccagcaaactata
gaagagatgtcattgcatgaggcttgcaatgcagctgtaggtgttgacagttctttctca
tttagcagcatcactggggatgctacagcttgcgatcaacagtatgtcagatttcgcaca
tttattcaggactcagtggagccatacaggacagacctgttgttacttctgtatccagtt
tttgtgcatgtttacctcgagttaatctgcaatggtcacaaaactccagcccacaagttt
tacagtcggcaccactcttacttcctagaaaactcagagtacagaatgattgtagaggca
ctggcacagttatttcacaaagaagatgtgtacagcaatgactatattagaaaatttagg
gaagataaattcaaagtggtcctgtcagaagatgctttacaatatctgtttcgatacctc
aagaacgaggacaacatgattatgttgcagatattcaaccaccatatccacattaaagtg
aagatgcccacagatgtggagttagaccttcaggactttgtaaacttccatgaccttgtt
cttccttctgctcctgacaccccacaaaacaaagtgatcaggaatgaagtgtccctcagc
tctctacaacaaagtatacagaaagtgcgggatggggcaccatgtctgacttccatcttg
ttttatacatttctcaatacacatcaaggattgtgttgcacaagtatttcaccaaatgag
gcactcatctgtggaggctttgaggaaaattcaatcaaaatctggagtttaacaccatca
aaattgcaccctaaaaaggcagtagtcaggacagacagaatcacaatggttggagattat
ttagaggacgtagaggaaaaagagtgttccagaacgagaccaaatgaagttatcacaatg
agggcacatagtggttctgtttatggaactgcatttactgctgattccaagtacctgctg
tcttgttcagaggataaatcagtacggctatgggatcttgacacttacaataatgttgca
ctatacagaggacacagctatgcagtttgggatatagatacaagcccctcaggcagcttc
tttgccagctgttcacatgacaggacagtaaagttgtgggcagttgacagaacctatcct
ctcagaacatttgtagggcacacaatggatgtggattgtgtgaaattccaccccaactgt
aactatgtagccacaggatctggggacaagtctgtgaggttgtggagtgtgcaagagggc
aaatgtgtccgcctgatgcagggccacaggggcagtatatactctctggccttctctcct
gatggacagatgctagcctcagctggagaagatagacgtattagagtgtgggacttaggc
acaggttctataataaaagagctaaggggccacacagacattgttcacagtttgtgtttt
aacagagaaagcagtatgttagcatcaggtatgtttattttcagttga

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