Lacimicrobium alkaliphilum: AT746_02650
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Entry
AT746_02650 CDS
T04189
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lal
Lacimicrobium alkaliphilum
Pathway
lal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AT746_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lal03021
]
AT746_02650
03400 DNA repair and recombination proteins [BR:
lal03400
]
AT746_02650
Enzymes [BR:
lal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AT746_02650
Transcription machinery [BR:
lal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AT746_02650
DNA repair and recombination proteins [BR:
lal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AT746_02650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
ALS97276
UniProt:
A0A0U2ZFR5
LinkDB
All DBs
Position
547028..551215
Genome browser
AA seq
1395 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLTEEEYLDALEEHGDEFEAKM
GAEAVFDLLKVLDVDADVVAMREELPSINSETKRKKISKRLKLLESFQQSGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVFKNPHEAEKAYRTD
IAELHARVKVRIREVEVDEQGNKTEKYSLIDTTVGRAILSLVLPEGLPFELINQPMGKKQ
ISRLLNVCYRTLGLKDTVIAGDQIMYTGFHYAMIAGVSICLNDMVIPDEKVEIIGEASAE
VAEIQEQFQSGLVTAGERYNKVIDIWSAANERVAKAMMSNLSKEEVVNRDGETEEQNSFN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVKMTPLIEGGDVVEPLRERVL
GRTVAEDVYTPGTDEVLVERNVILDEALVDLLEAHSIDQVMVRSVITCENDFGVCAKCYG
RDLARGHQVGIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTDGRLKL
HNAKFVRNTEDKVVITSRSTEITIIDDQGREKERYKVPYGATLAVDDSAKVNAGDVVANW
DPHSHPIIVERDAKISFADIDDSNTEMQQDELTGLTRIVVKDLTKANAKEPKLILESEEH
GLQEIRLPSFTTIEAADGKVAKTGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEVSGTISFGKETKGKRRLVIAPEQGEAYEEMIPKWRQLNVFEGEKVEKGEVISDGPE
SPHDILRLRGISAVSNYIVNEVQDVYRLQGVKINDKHIEVVIRQMLRKCLITHPGDSQFL
EGEQIELAAVKIENRRLEKQGKIPAQYEIQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHQQRQRRKMAAAEVMEDPSVSAAEAEQALS
DALNAETGSSDDAES
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttttgaagcagcaaaataagaccgaagaattcgataatatt
cgtatcggtctggcttcaccggatatgatccgatcgtggtcttatggtgaggttaaaaaa
cccgaaaccattaactaccgcacctttaaaccagagcgtgaaggcctgttttgtgcgcgt
atttttggtccggtaaaagattatgagtgtttgtgcggcaagtacaaacgccttaagcat
cgtggcgtgatctgtgagaagtgtggtgttgaagtcacactgaccaaggtacgtcgggag
cgtatgggccatattgaactggccagtccggtagcccatatctggttcctgaaatcacta
ccgtcccgcatcggtctgatgctggatatgacattacgtgatatcgagcgggtactgtat
ttcgaatcttatgtggtgacagagcccggcatgactacgctggaacgttcacagttgctg
acagaagaagaatacctggatgcgctggaagaacatggtgacgaattcgaagccaagatg
ggcgccgaagcggtattcgatctgcttaaagtgctggatgtggacgccgatgtggtggcc
atgcgcgaagagctgccttcgatcaattccgagaccaagcgtaaaaagatctccaagcgc
ctcaagctgctagagtctttccagcaatcaggtaaccgccctgagtggatgatcctgacc
gtattgccggtattgccaccggacttgcgtccgctggtaccgctggatggcgggcgtttt
gccacatccgatctgaacgatttgtatcgtcgtgtgatcaaccgtaacaaccgtctcaag
cgcctgcttgatctggctgcgccagatatcatcgtgcgtaacgagaagcgtatgttgcag
gaagccgtcgacgcgttgctggacaacggtcgtcgtggccgtgctatcacaggttctaat
aagcgcccgctgaaatcattggcagatatgatcaagggtaagcagggtcgcttccgtcag
aaccttttgggtaaacgtgtcgactactcaggtcgttccgttatcacagtgggtcctact
cttcgcctgcaccaatgcggcctgccgaagaaaatggcccttgagctgttcaaacccttt
atctatggcaagctggaaggtcgcggtctggcgacaaccattaaagcagccaagaagatg
gtggagcgtgaagcgccggaagtctgggatgtactggacgaagttatccgcgaacacccg
gttctgcttaaccgcgcaccaaccttgcacaggctgggaatccaagcctttgaacctgta
ctgatcgaaggtaaagcaatacaactgcacccgcttgtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggcagtgcatttgccactgacactggaagcacagcttgaatcc
cgtgcgctgatgatgtcgactaataacatcctgtcgccggctaacggtgagcccattatc
gttccttctcaggacgtggtgctgggtctttactatatgacccgggaccgggtgaatggc
aaaggcgaaggcatggtgtttaaaaacccccatgaagccgaaaaagcctatcgcacggat
atcgcagaactgcatgcccgtgtcaaagtgcgtatccgcgaagtggaagtggatgagcag
ggtaataagactgaaaagtattcgctgatcgacaccacggtgggccgtgctattttgtca
ctggtattaccggaaggtctgccctttgagctgattaaccagcctatgggtaagaaacag
atctcaaggttgctgaacgtttgttaccgtactctgggtctgaaagacaccgttattgcc
ggtgaccagatcatgtacacgggctttcattatgcaatgattgccggtgtgtcaatctgc
ctcaacgacatggtgatccctgatgagaaggttgaaatcatcggtgaagccagtgctgaa
gtggcagaaatccaggagcagttccagtctggtctggtaacagccggtgagcgctataac
aaggttattgatatctggtctgcggctaacgagcgtgttgccaaagccatgatgagcaac
ctgtcgaaggaagaagtggttaaccgtgatggtgaaaccgaagagcagaattctttcaac
tccgtatacatgatggccgactccggcgcccggggtagcccggcgcagattcgtcagctg
gccggtatgcgtggtctgatggctaagcccgatggctccatcatcgagacgcccatcacc
gccaacttccgtgaaggtctgaacgtactacagtactttatctcgactcacggtgcccgt
aagggtctggcagataccgctctgaagacagcaaactcaggttatctgactcgtcgtctg
gtcgacgtggcgcaggatctggttatcaccaatgacgattgcggcactttcgaaggtgtg
aaaatgacaccactgatcgaaggtggtgatgtggttgaacccttgcgtgagcgggtgttg
ggccgcacggtcgctgaagatgtgtatacaccgggtactgacgaagtgctggtagagcgt
aatgtgatcctggacgaagctctggtggacttgctggaggctcactctatcgatcaggtg
atggtacgctcggtaattacctgtgaaaacgacttcggtgtatgtgccaagtgttacgga
cgtgacctggcccgtggtcatcaggttggtatcggtgaatctgtaggtgttatcgccgca
cagtcaatcggtgaacctggtacccagctgaccatgcgtaccttccacattggtggtgca
gcatcccgagcttcagctgaaaacagtgtgcaggtgaaaaccgatggtcgcctgaaactg
cataacgccaaatttgtacgtaataccgaagacaaagtggtgatcacttcacgttcaact
gaaatcacaattattgatgaccagggtcgtgagaaagagcgttacaaggttccttatggt
gccacccttgctgtggatgacagtgctaaggttaacgccggtgatgtggtagcgaactgg
gatccccattcgcaccctatcattgttgagcgtgacgccaagatcagctttgccgatatt
gacgacagcaacactgaaatgcagcaggatgagctgaccggtctgacccgtatcgtggtc
aaagatctgaccaaggccaacgccaaagagcctaagctgattctggaatcagaagagcat
gggctgcaggaaattcgtctgccgagcttcacgactattgaagcggccgatggaaaagtg
gccaaaaccggtgacgtgctggcgcgtattccgcaggaaagctccaagacccgggatatt
accggtggtctgccgcgggttgcggatctgttcgaagcccgtaagcccaaagagccggct
atattggccgaagtgtcaggtaccatcagctttggtaaggaaactaaaggtaagcgccgt
ctggtgatagcccctgaacagggtgaagcctatgaggaaatgattccgaaatggcgtcag
ctgaatgtatttgaaggtgaaaaggtcgagaaaggggaagtgatctccgatggtcctgag
tcaccccatgacattctgcgactgcgtggtatcagtgcggtgtccaactatatcgtcaat
gaagttcaggatgtctatcgcctgcagggtgtaaagattaacgataagcatatcgaggtg
gtgatccgccagatgctgcgtaagtgcctgatcactcatccgggtgacagtcagttcctc
gaaggcgaacagattgagttggcagcggttaagattgaaaaccgcagactggaaaaacaa
ggcaagatcccggcacagtacgagatacagttactgggtattaccaaagcctcgttgtct
accgagtcgttcatctctgcggcgtccttccaggaaaccaccagagtattgaccgaagcg
gcagtgcagggcaaagaagacgatcttcgcggtctcaaagagaacgttatcgtgggtcgc
ctgattcctgccggtacaggttttgcgtatcatcagcagcgccagcgcagaaagatggcg
gctgcggaagtgatggaagatccatcggtttccgccgcagaagcagagcaggcattgtct
gatgctctgaatgccgaaaccggcagttctgatgacgccgaaagttaa
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