Lacimicrobium alkaliphilum: AT746_03925
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Entry
AT746_03925 CDS
T04189
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lal
Lacimicrobium alkaliphilum
Pathway
lal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT746_03925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lal03019
]
AT746_03925
03009 Ribosome biogenesis [BR:
lal03009
]
AT746_03925
Enzymes [BR:
lal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT746_03925
Messenger RNA biogenesis [BR:
lal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT746_03925
Ribosome biogenesis [BR:
lal03009
]
Prokaryotic type
rRNA helicases
AT746_03925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
UvrA_inter
Cas3-like_C_2
WH_MCM3_C
EDR1_CTR1_ARMC3_pept
Motif
Other DBs
NCBI-ProteinID:
ALS97502
UniProt:
A0A0U3A903
LinkDB
All DBs
Position
complement(837756..839525)
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AA seq
589 aa
AA seq
DB search
MTSNTDLSFTDLNLPEPVLKALEKVGYEKPSPIQAESIPLIMEGHDLLGQAQTGTGKTAA
FALPMLAKIDSSDTTTQLLVLAPTRELAIQVAEAFHTYASFDRNIKVLPIYGGQSYDNQI
RPLKRGVQVVVGTPGRIIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVEWILSHAPK
ERQTALFSATMPDRIRNITNKYLKSPKIVRIASKVSTASTIRQRFCQVAGHHKLEALTRI
LEVEEFDGIIVFVRTKNATMELAEKLAARGFAVEPLNGDIQQSARERTVDRLKQGKIDIL
IATDVVARGLDVERISHVINFDIPYDTESYVHRIGRTGRAGRSGEAILFISHREKRMLGA
IEKATRQKIEVMTIPSISELNEQRLKRFKQSVIEAMNDDKLEAMISVIEAIQAETEAEPE
VLMAALAKLAQGNEPLLLSESDRPDLNARPPRVERPERDRGSRDRPERSPRGRDGKPGDK
PRRRSSKPEEGMQRYRLDVGHTHGVKPGNIVGAIANEAGMDSKHIGAIEIHDSYSTVDLP
EGMPPEVRQVLQKARVAGQKLGIREWSEEPPKRDKPKFDKPRKERKPKE
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtaatacagatctcagctttacagacttaaaccttcccgagccggtactcaag
gcactggagaaagtgggctatgaaaagccctctccgattcaggcggaaagcatcccgctg
attatggaaggtcacgatctgttaggtcaggctcagacaggtaccggtaaaaccgcggcc
ttcgccctgcccatgctggcaaagatagacagtagcgacacaaccacacaactgctggtg
ttggcacccacccgggaactggccattcaggtggcagaggcctttcatacttatgcgagc
tttgaccgcaatatcaaagtgttgcccatctatggcggacaatcctatgacaaccagatc
cggccgctgaaaagaggcgtgcaggtggtagtagggactccgggcagaatcatcgatcac
atcaaaaaaggtaccctgaagctggataagctcaagtttctggtactggatgaagccgat
gaaatgctccgcatgggctttattgatgatgtggaatggattttaagtcatgcgccgaaa
gagcgtcagaccgcgctgttttcggcgaccatgcccgatcgtatccggaatatcaccaac
aagtacttaaaatccccaaaaatagtaagaattgcctctaaggtcagtaccgccagcacc
attcgccagcgtttctgccaggtcgcgggtcatcataaacttgaggccctgacccggatt
ctggaagtggaagaattcgatgggatcattgtgtttgtacgtaccaaaaacgcgaccatg
gaactggcggaaaagctcgccgcccgaggctttgccgtagaacccttaaacggtgatatt
cagcaaagtgccagagaacgtactgttgatcgtctcaagcagggtaaaatagacatcctg
atcgctaccgatgtggtggcccggggactggatgtggagcgcatcagccacgtgatcaat
ttcgatatcccctatgacaccgaatcttatgtgcatcgtatcggccgtacaggccgtgcc
ggacgctccggtgaagccatattgtttatctcgcaccgtgagaagcgcatgttgggggcc
atagaaaaggccacccgtcagaaaattgaagtgatgaccattccttctatatctgagctg
aacgagcagcgcctgaaacgctttaaacaatccgttatcgaagcgatgaatgatgacaag
ctggaagcgatgatcagtgtgattgaagctattcaggcagaaactgaagcggaaccggaa
gtgttgatggcggcgttggctaagctggctcagggtaatgaaccgctgcttctgagcgaa
tctgatcgcccggatcttaacgcccgcccccccagagttgaacgccctgaacgtgaccgg
ggtagcagagacagacctgagcgcagtccaagaggacgggatggcaaacccggtgataaa
cctcgccgtcgcagctccaagcccgaggaaggtatgcagcgctaccgcctggatgttggc
catactcatggtgtcaaacccggtaatatcgtcggtgccattgccaacgaagcgggtatg
gacagcaagcatattggtgccatcgaaatccatgacagttacagcaccgtagatttaccc
gaaggcatgcccccggaagtacggcaggtattgcaaaaagccagggttgccgggcagaag
ctggggatcagggaatggagtgaagagccgccaaaacgggataagcccaaatttgacaag
cccagaaaagagcgtaagcccaaagagtaa
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