Lacimicrobium alkaliphilum: AT746_05135
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Entry
AT746_05135 CDS
T04189
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lal
Lacimicrobium alkaliphilum
Pathway
lal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT746_05135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lal03019
]
AT746_05135
Enzymes [BR:
lal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT746_05135
Messenger RNA biogenesis [BR:
lal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT746_05135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UTP25_NTPase-like
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALT00334
UniProt:
A0A0U2PL09
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All DBs
Position
1137835..1139133
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AA seq
432 aa
AA seq
DB search
MLFNELGLSAELLRAVSQQGYTQPTPIQAKAIPEILKGSDVLAGAQTGTGKTAGFTLPLL
QRLGETTPKDGKRPVRALVLTPTRELAAQVSESVRAYGKNLPLKSAVIFGGVSINPQISA
LRRGVDILVATPGRLLDHVGQKTLDLSKVEILVLDEADRMLDMGFIHDIKKVLALLPKAR
QNLLFSATFSDEIKRLADGLLNNPVLIEVARRNTASETVEQIIHPVDKSNKRKLLSYLIG
SENWQQVLVFTRTKHGANRLAQQLDKDGLSSAAIHGNKSQGARTRALADFKSGKVRVLVA
TDIAARGLDIDHLPHVVNYELPNVPEDYVHRIGRTGRAGNEGKAVSLLSIDENKLIRDIE
RLLKRQLPREVIAGFEPDPNAKPEPEVSRPRTNQGRNRPAGRARSGNGNGNGAYAGNGRS
RNPSRQSRGATA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgttatttaacgaactcggcctttcggctgaacttttgcgtgccgtttcccagcagggt
tacactcagcctacccctattcaggccaaggccattcccgaaattctcaaaggcagcgat
gtattggcgggcgcgcaaaccggcaccggtaaaaccgccggttttactctgccgctgctg
caacgcctcggcgaaacaacgcccaaagacggcaagcgcccggtgcgggcgctggtgcta
actcctacccgtgaactggcggcgcaggtgagcgaaagcgtgcgtgcttatggtaagaac
ctgccgctgaaaagtgcagtgatctttggcggtgtcagtatcaacccgcaaatctcggca
ctgcgccggggtgtggatattctggtggcaacaccggggcgattgctggatcatgtgggc
cagaaaaccctggatctgtcgaaggtggaaattctggtactggatgaagcggatcgtatg
ctcgatatgggctttatccatgacattaaaaaggtgctggcattattacccaaagcccgt
cagaacctgttattttcggcgacattttccgacgaaatcaagcgcctggccgatggtctg
ctgaacaacccggtactgatcgaagtggcccgccggaatacggcatcagaaaccgtcgag
cagatcattcacccggttgataagagtaacaagcgcaagctgctctcttacctgattggt
tctgaaaactggcagcaggtactggtatttacccgtactaaacatggtgccaatcgcctg
gcgcagcaactggataaagatggtctgagctcagcggctattcacggcaacaagagccag
ggtgcccgcacccgcgcgctggccgattttaaatccggtaaagtgcgcgtgctggtggcc
accgatatcgccgccagggggctggatatcgatcatctgcctcatgtggtcaactatgaa
ctgcctaatgttccggaagattatgtacatcgcattggtcgtacaggtcgtgcgggtaat
gagggtaaggcggtttccttgttaagtatcgacgagaataaattgattcgggatattgaa
cgtttgcttaaacgtcagttgcccagagaggttatcgccggttttgaacctgatccgaat
gccaaacctgagccagaggtcagccggccgcgcacaaatcaggggcgcaacagaccagca
ggaagggccagaagtggtaacggtaatggcaatggtgcttatgccggtaacggccgtagc
cgcaatccttccaggcaaagccgcggcgccaccgcctga
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