Leptotrichia alba: AB8B28_07505
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Entry
AB8B28_07505 CDS
T10903
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lala Leptotrichia alba
Pathway
lala03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lala00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8B28_07505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lala03019
]
AB8B28_07505
03009 Ribosome biogenesis [BR:
lala03009
]
AB8B28_07505
Enzymes [BR:
lala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB8B28_07505
Messenger RNA biogenesis [BR:
lala03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB8B28_07505
Ribosome biogenesis [BR:
lala03009
]
Prokaryotic type
rRNA helicases
AB8B28_07505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
Cas3-like_C_2
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
XDU61498
UniProt:
A0AB39V2R5
LinkDB
All DBs
Position
complement(1496443..1498158)
Genome browser
AA seq
571 aa
AA seq
DB search
MQRFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIDADKTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKAG
VDIVVGTPGRVMDLMRKKVLKVDNLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLF
FSATIPKAIMAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQN
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGVAITFVTPREASKLAQIKRVTK
TDIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQVLASVLR
HVYEDEFLPDNYNEIADVKVKINDKTRLFIALGSKDGYNVGRLLDLLNKKARTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDAKPLVEEATGNRNGGGEKGDKKSGKRDRDRK
RRKKSSEKKSDKSSKGKKDKKKDKKTRRVKK
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagatttgaagatttcggtttaagtacagagatgcttaatgccctaagtaaaaaa
ggatttgaagaaccaagtgaaatacagaaattggttgttcctgaattattgaaagaaaga
actcacttgattggacaggctcagacgggaacgggaaaaactgcggcttttggtattccg
atattggaaactattgacgctgataaaacagttagagctttaattttggcaccgacaagg
gagcttgcaaatcaagtttctgatgaaatttattcattaaaaggagaaaaagatataaaa
gttcttgctgtgtatggaggagcttctattgaaaatcagataaaaagattaaaagctgga
gtagatattgttgtggggactccaggacgtgttatggatttgatgagaaaaaaagttcta
aaagtagataatttggactattttgtgctggatgaagctgatgaaatgttaaatatggga
tttttggaagacattgaagcaattttggaaaaaactaatgatgagaaaaaaatgttattc
ttttcagccacaattcctaaagcaattatggcaattgcaaaaagatttatgcctgaacac
aaattgctaaaagttgaaaaaaaggaacttacaacaaacttaacagagcaaatttattac
gaagtaaaacaggaagataaatttgaagcactgtgtagagttttagattatgagcaaaac
ttttacggaatagtattttgccgtacaaaatcagaagttgatgatgttacaaataaattg
aaagcaagaaactatgatgcagaatgtattcacggagatattacccaagctctaagacaa
aaggcgcttgatttattcaagaaaaaaatattgacaatattagttgctacagacgttgcg
gctcgtggaattgatgtaagcaacttgacgcacgttattaactactctatcccgcaggaa
gctgaatcttacgttcacagaatcggtagaacaggacgtgctggtcataagggagttgca
ataactttcgtaactccaagagaagcaagcaaacttgcccaaattaagagagttacaaaa
actgacattaaaagagaagacattccaaacgtggaagaaattctggaagctaaaaaagaa
gcattagttgcttatgtagacgaaattatcaaagaaagcgattttaatgcttacgaagag
cttgctcaaagattaattgaaggaagagacgctagacaagtgcttgcttctgttttaaga
cacgtttatgaagatgaatttttaccagataattacaatgaaattgcggatgtaaaagta
aaaattaacgataagacaagattattcatcgcacttggaagcaaagacggctataacgtg
ggaagacttcttgatttgttaaataaaaaggcaagaacgcctggaagaaaagtaaaagat
gtaaaaattatggacaaatactcttttatcacagtaccattacaagaagcagaatacata
atgcgggcattaaattctaaaaaagatgcaaaaccgcttgttgaagaagctactggaaac
agaaatggcggtggtgaaaaaggtgacaaaaaatctggaaaaagagatagagacagaaaa
cgaagaaaaaaatcttctgaaaaaaaatctgataaatcttcaaaaggaaaaaaagataaa
aagaaagataaaaaaacaagaagagtaaaaaaataa
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