Leptotrichia alba: AB8B28_11525
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Entry
AB8B28_11525 CDS
T10903
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lala Leptotrichia alba
Pathway
lala03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lala00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB8B28_11525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lala03400
]
AB8B28_11525 (mfd)
Enzymes [BR:
lala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB8B28_11525 (mfd)
DNA repair and recombination proteins [BR:
lala03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB8B28_11525 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
RecG_dom3_C
Cas3-like_C_2
UB2H
DUF7053
Motif
Other DBs
NCBI-ProteinID:
XDU62234
UniProt:
A0AB39V4N3
LinkDB
All DBs
Position
complement(2340254..2343472)
Genome browser
AA seq
1072 aa
AA seq
DB search
MNFNLNFLNKIEKLKNGNKDILQSKNNFYRGAIPWFLLCSERKKIIYISTSNRNLENYHA
MLENYYEMSEKQKDILTEKSKSSKKNSKESKNKVEDKKIIDIFENISQNKEDITGINIRL
LDILKNQEQFILFVNLQITLDIFFEKVKFFSFETGKEYSFSKIVKFLVENGYENSYLIEK
KGQYSRRGDILDIFPPDLEHPVRLEFFGDELESIRVFDIDSQISVEKMEEIKVFGNLLSG
NNYELIELIDELKAEDVTIAIENEELLDYKIEEFILLDRSREETYRKRYENLKKKSIFVQ
TKNFSQEQIETFRDKNRLEKLSKIEDVYIFTNSYEKKIAEYGQILTEKENNLEIEKYELF
EGFIFNDNSENPDNKNRKNNFIVLTDRELDGYIYERKKKTAKAIKYKKVNQIIEGDYVIH
VQYGVGIYKGIQTMEERDYLKIKYADEDILYIPVEKLDRLEKYVSNDTEPQLFRLGTRGF
KRKRKKLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNVIN
DVKKDMESPRIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFK
RRFENYPITIENLSRLTKSKSKDILKNLKNGIIDLVIGTHRLLSDDVQFKNLGLLIIDEE
QKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEIL
DWDEETIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPEFVKIEFINGQLPPKEI
KDKLLRFENGQFDILIASTIIENGIDVGNANTILIENYTGLGLSQVYQLKGRVGRSNRQG
YCYLLKTRNITKQGRLKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFG
YDLYIKMLNEEIRKQKGEFVEKIENVEIVLDERGFIPETYIEKDEERLNIYKRFAMLETD
SELTDLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRILETRNHFELYFLENAQEK
IIELNKKISMQLVEKIITIESIKNKKKNDEETNETFVIMKTRKTDFLNIVKE
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaacttaaatttcttaaataaaatagaaaaattaaaaaatggaaataaagac
attttacaatctaaaaataatttttaccgcggtgcaattccgtggtttttattatgttcg
gaaaggaaaaagataatttatatttccacatccaacagaaatttggaaaattatcacgca
atgctggaaaattattatgaaatgtcagaaaaacaaaaggatattttaacggaaaaatct
aaaagtagtaaaaaaaatagtaaagaaagtaaaaataaggtagaagataaaaaaataatt
gatatttttgaaaatatttcacaaaataaggaagatattacaggaataaatataagactg
ctagatattctaaaaaatcaggaacagtttattctatttgtaaatttgcagattactttg
gatatattttttgaaaaagttaagtttttttcctttgaaactgggaaagaatacagtttt
tcaaaaattgtgaaatttcttgtggaaaatgggtatgaaaattcatatttgattgagaaa
aaagggcagtacagcagacgtggagatattctcgatattttcccgccggacttggaacat
cctgttagactggagttttttggggatgaactggaaagtataagggtttttgatattgat
agccagatttctgtggaaaagatggaagaaataaaggtttttggaaatttgctttctgga
aataattatgaattgattgagcttattgatgaactaaaggcagaagatgttacgatcgct
attgaaaatgaggaattgctggactataaaatagaagagtttatcctgcttgacagaagc
cgtgaggaaacttatcgaaaaaggtatgaaaatctgaagaaaaaaagcatttttgttcag
actaaaaatttctcacaggagcagattgagacttttagggataaaaataggcttgaaaaa
ttgtcaaaaattgaagatgtttatatttttacaaatagttatgagaagaaaattgctgaa
tatgggcaaattctaactgaaaaggaaaataatctggaaattgaaaaatatgagctgttt
gaaggatttatctttaatgataattcagaaaatccagataataaaaatagaaaaaataat
tttattgtacttacagacagggagcttgacggatatatttacgagcgaaagaaaaaaaca
gcaaaagctataaaatataaaaaagtcaatcagattatcgaaggagactatgtaattcac
gttcagtacggtgttggaatttacaaaggaattcagacaatggaagagcgggattacctg
aaaattaagtatgctgatgaggatattttgtatattcctgtggaaaagctggatagactg
gaaaaatatgtgtcaaatgatacagaaccgcagttattcaggctgggaacacgtggattt
aaacgaaaaaggaaaaagctcgaagaagatattcagaaatttgcggcagaacttatcaaa
atacaggcacgaaggcaaagccagaatggttttgtataccagaaggatactgtgtggcag
gaggaatttgaggcgaattttccatttgaggaaactgaagatcagagaaatgtcataaat
gatgtgaaaaaggatatggaaagtccgcgaataatggacagaattgtgtgtggagatgtt
ggatatgggaaaacagaagtcgcgatgagagcggcattcaaagcgattgacaatggaaag
caggttgttatggtggctccaactactgtacttgcagaacagcattttgaacggtttaaa
cgaagatttgaaaattatccgattacaattgagaatttatcacggcttacgaaaagtaaa
tcaaaggacattttaaaaaatctaaaaaacggaattattgacttagttattggaactcac
aggcttctaagcgatgacgtgcagtttaagaacctagggcttttaattattgatgaagag
caaaaatttggcgttaaggctaaagaaaaattaaaatctcaaagagaaaaactggatgtg
ctgacattaaccgcaactccgattccacgtacattaaatcttgcgatgcttggaatcaga
gagatttccataattgatactccaccaacaaacaggcttcccattataacagaaattctc
gattgggatgaggaaacaataaaaatggcaatactgcgtgaactgtcacgtgatgggcag
gttttctatatttacaacgatgtaaaaaatatgaaggaaaaattgaaggaattgaaggaa
atgcttccagagtttgtaaaaatcgaatttataaatggacagctcccgccaaaggaaatt
aaggataagttattacgttttgaaaacgggcagtttgacattctaattgcttcaacaatc
attgaaaatggaattgatgtgggaaatgccaatacaattctgattgaaaactatactggt
ctaggattatcgcaggtatatcagctgaaaggtcgtgtagggcgtagcaacaggcaagga
tactgttatctattaaaaacgagaaatattacaaagcaagggcggttaaaggaagaaagc
atgctaaaagttgaaggaataaaatcaggaggttttcaaatttcgatggaagacttgaaa
atacgtggtgctggagaaattttaggagataagcagcacggaacaattgaaacttttgga
tatgatttatatataaaaatgttaaatgaagaaattcgtaagcaaaagggcgagtttgtc
gaaaaaattgaaaatgtggaaattgttctggatgaaagaggcttcattcctgaaacatat
attgaaaaggatgaggagaggctgaatatctataaacgttttgcaatgctggaaacagat
agtgaattaactgatttgcttgatgaaattagagataggtttggaaaaattccagagcag
atgaaaaaatttattttaagcattaaattaaaattatttgctgaaaaacataaaattcag
agaatccttgaaacaagaaatcattttgaactgtactttttggaaaatgcacaggagaaa
ataatagaattaaataaaaaaatttcaatgcaacttgtagaaaagattataactatcgaa
agtataaaaaataaaaagaaaaatgatgaagaaactaatgaaacatttgtaataatgaaa
acaagaaaaacagattttttaaatattgtaaaagaataa
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