KEGG   Lagenorhynchus albirostris (white-beaked dolphin): 132509116
Entry
132509116         CDS       T10760                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lalb  Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03030  DNA replication
lalb03410  Base excision repair
lalb03420  Nucleotide excision repair
lalb03430  Mismatch repair
Brite
Enzymes [BR:lalb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     132509116 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     132509116 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     132509116 (LIG1)
DNA replication proteins [BR:lalb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    132509116 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     132509116 (LIG1)
DNA repair and recombination proteins [BR:lalb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     132509116 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     132509116 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     132509116 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR PucR
Other DBs
NCBI-GeneID: 132509116
NCBI-ProteinID: XP_059985677
LinkDB
Position
19:9303535..9345493
AA seq 922 aa
MQRSIMSFFQPKKEGKVKKPEKEISNSTRETESPPKVALKERNRVVPEGDSPVKRPGRKM
ARVLGSEGEDEEEEAPKPPKIQKRAPDSPQVSPPSPGTPPESSPSHSSTSPTVVSPSGIP
KRRTARKQLSKRTFQDVLQEQGKDEDGGTKKKRKKEEEEEEELETPTESLTEPEGGNKKE
AEEGDQPRSPPEPLKTSTKPPTESVSEPKVAVKQGPQEDGQAKPPPKAPKTLSSFFSPRK
PAIKQEAKEEGPSALRKDETKGHLDPSSYNPAKNNYHPVEDACWKVGQRVPYLAVARTFE
KIEEVSARLRMVETLSNLLRSVAALTPADLLPVLYLSLNRLGPPQQGLELGIGDGILLKA
VAQATGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFTKFRDIAQLAGS
ASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFP
PAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGVERLPEHCRLSPG
VPLKPMLAHPTRGVSEVLRRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGR
YPDIISRIHKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCL
YAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKD
SCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGG
FLLAAYDEESEELQAICKLGTGFSDEELEEHHQTLQALVLPAPRSYVRADGAVAPDHWLD
PSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFICVREDKKPEEATTSAQVACLY
RKQSQIQNQQGAEPDSDLEDFY
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgcagcgaagtattatgtcatttttccagcccaagaaagagggcaaagtgaagaagcca
gagaaggagatatccaacagcaccagagaaacagagtcccctccaaaggtggcgctgaag
gagcggaatagagtggtacctgagggcgactctccagtgaagaggccagggaggaagatg
gcccgggtcctgggcagcgaaggggaggacgaggaggaggaagcccccaagccccccaaa
atccagaagcgtgctccagattccccacaagtctcccctcccagtcctggcacaccgcct
gagagcagcccttcccactctagcacctctcccacggtcgtctccccgtcagggatcccg
aagcgtcgcacggcccggaagcagctttccaaacggacatttcaggatgtcctgcaagag
cagggcaaggacgaggacggaggaaccaagaagaagaggaagaaggaggaggaggaggaa
gaagaattagagacaccgacagaaagcctcacagagcctgaagggggcaacaagaaggaa
gcagaagaaggggaccagcccaggtcaccccctgagcccctgaagacctccacaaagccc
ccaacagaaagcgtttcagagcccaaggtggccgtgaagcagggaccacaggaggacggc
caggctaagcctccccccaaagctcccaagacgctcagcagtttcttctctccccggaag
ccagcgatcaaacaagaagcaaaagaagagggacccagcgctctgagaaaggacgagacc
aagggacacctggacccatccagctacaatcctgccaagaacaactaccatcccgtcgaa
gatgcttgctggaaggtgggccagagagtcccttacctggctgtggcccggacgtttgag
aagatcgaagaggtttctgcacggctccggatggtggagacactgagcaacctcctgcgc
tccgtggcggccctgacacctgctgacctcctccccgtcctctacctcagcctcaaccgc
ctggggccgccccagcagggcctggagctcggcattggcgacggcatcctcctcaaggcg
gtggcccaggccacaggccggcagctcgagtcggtccgggccgaggcggccgagaagggc
gacgtggggctggtggccgagagcagccgcagcacccagaggctcatgctgcccccaccc
gccctcaccgcctccggcgtcttcaccaagttccgggacatcgcgcagctggccggcagc
gcttccacagccaagaagatggatgtcatcaaaggcctctttgtggcctgccgccactca
gaagcacgattcatcgccagagccctgagtggacggctgcgcctcgggctggcagagcag
tcagtgctggcggccctcgcccaggccgtgagcctcaccccgccaggtcaagaattcccc
ccagccgtggtggatgctgggaagggcaagacagcagaggccagaaagacatggctggag
gagcaaggcatgatcctgaagcagacgttctgcgaggtgcccgacctggaccggatcgtc
cccgtgttgctggagcacggtgtggagcggctcccggagcactgcaggctgagcccaggg
gtccccctgaaaccaatgttggcccacccaacgcggggcgtcagcgaggtcctgaggcgc
tttgaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccac
gttttggaaggcggggaggtgaagatcttcagcaggaatcaggaggacaataccggaagg
taccctgatatcatcagccgcatccacaagattaaactcccatcagtcacatccttcatc
ctggacgcggaagctgtggcttgggaccgggaaaagaagcagatccagccattccaagtg
ctcaccacccgcaaacgcaaggaggtggacgcggcagagatccaggtgcaggtgtgtctg
tacgccttcgacctcatctacctcaatggagagtccctggtacgtgagcccctttcccga
cgccggcagctgctccgggagaacttcgtggagacggagggcgagtttgtctttgccacc
tctctggacaccaaggacacggaccagatcgccgagttcttggagcaatcggtgaaagac
tcctgcgaggggctgatggtgaagaccctggatgtggacgccacctacgagatcgccaag
aggtcgcacaactggctcaagctgaagaaggactacctggatggcgtgggcgacaccctg
gacctcgtggtgatcggcgcctacctgggccggggaaagcgggccggccggtacgggggc
ttcctgctggccgcctacgacgaggagagcgaggaactgcaggccatatgcaagctcgga
acgggcttcagcgacgaggagctagaggagcatcaccagaccctccaggccctggtgctg
cccgccccacgctcctatgtccgggccgacggcgccgtggcccctgaccactggctggac
cccagcgccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctacccggct
gcccggggcctggtggatagtgagaagggaatctccctccgcttccctcggtttatctgc
gtccgtgaggacaagaagccggaggaggccaccaccagtgcccaggtggcctgtctgtac
cggaagcaaagtcagattcagaaccagcaaggcgcagagccagactccgacctggaagat
ttctactag

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