Lagenorhynchus albirostris (white-beaked dolphin): 132510650
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Entry
132510650 CDS
T10760
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132510650 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lalb03041
]
132510650 (DDX42)
Enzymes [BR:
lalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132510650 (DDX42)
Spliceosome [BR:
lalb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132510650 (DDX42)
Complex B
132510650 (DDX42)
Complex C
U2 SnRNP specific factors
132510650 (DDX42)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
132510650
NCBI-ProteinID:
XP_059988754
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All DBs
Position
20:45534244..45584919
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AA seq
711 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSGFGKSAPPQLPSFYK
IGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMA
EVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL
EYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNL
RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS
GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY
GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV
RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG
PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVI
SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTL
LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR
ERPGLGSENTDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQVGLKLSI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggtttcgct
attagtgcgggaaagaaggaggaaccaaaactcccacagcagtcccatagtgcctttggg
gcaaccagctcttctggatttggaaagtcggctccaccacagctcccttccttctacaaa
attggttctaaacgggccaactttgatgaagaaaacgcatattttgaagacgaggaagaa
gattctagcaatgttgatttaccttacattcctgctgaaaactcacctacccgccagcaa
ttccattccaagccagtagattctgatagtgatgatgatcccttagaggcattcatggct
gaagtggaggatcaagcggctagagacatgaagaggcttgaagaaaaggacaaggaaaga
aaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttatttt
cggtacatggcagagaatccaactgctggcgtggttcaggaggaagaggaggataatttg
gaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctcttcct
cccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaacat
gaagagataaccaacctcaccccacagcagctaatagatctccggcataagctcaatctt
cgggtttctggtgctgcacctcctagaccaggaagtagttttgctcattttgggtttgat
gagcaacttatgcaccagattcggaaatctgagtacacacaacccactccaatacagtgc
cagggtgtacctgtggcattaagtggtagagacatgattggtattgccaaaacaggcagt
gggaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaagaattg
gaaccgggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcagcag
atccacgcagaatgcaagcggtttgggaaagcgtataatctccgatcagtagccgtgtat
ggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgttgtc
tgtacaccaggtcgacttattgatcatgtgaagaagaaagctaccaaccttcaaagagtc
tcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccaggtg
cgatccatagcaagtcatgtccgtcccgacagacagactctcttattcagtgcaactttt
cggaaaaagattgaaaaactggccagagacatcctgattgaccctattcgtgtggtgcag
ggggatattggagaggcaaatgaagatgtgactcagattgtggagattctgcattctggg
cctagtaaatggaactggctcacccggcgtctagtggagtttacctcttcaggaagtgtc
ctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaaacaggag
ggtcatagtcttggcctgctccatggtgacatggatcagagtgaaagaaacaaggttatt
tcagactttaagaaaaaggacatcccagtcctcgtggccacagatgttgcagcccgtggt
ctggacattccttcaattaagactgtcattaactacgatgtggcacgagatattgatacc
catacgcataggattggccgaacaggacgagcgggtgagaaaggcgtggcctataccttg
ctgacacccaaggatagcaattttgccggtgaccttgtccggaacttggaaggagccaat
cagcatgtttccaaggaactcctagatctggccatgcagaatgcctggtttcggaaatcc
cgcttcaaaggagggaaagggaaaaagctgaacattggtggaggaggcctaggctatagg
gagcggcctggcctcggctctgagaacacggaccgaggaagtaacaacaatgtaatgagc
aattatgaggcctacaagccctccacaggagccatgggagatcggctgacggcaatgaaa
gcagctttccaggtcggtctgaaattaagcatttag
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