Lagenorhynchus albirostris (white-beaked dolphin): 132516820
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Entry
132516820 CDS
T10760
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132516820 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalb03019
]
132516820 (MTREX)
03041 Spliceosome [BR:
lalb03041
]
132516820 (MTREX)
03009 Ribosome biogenesis [BR:
lalb03009
]
132516820 (MTREX)
03016 Transfer RNA biogenesis [BR:
lalb03016
]
132516820 (MTREX)
Enzymes [BR:
lalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132516820 (MTREX)
Messenger RNA biogenesis [BR:
lalb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132516820 (MTREX)
Spliceosome [BR:
lalb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132516820 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
132516820 (MTREX)
Ribosome biogenesis [BR:
lalb03009
]
Eukaryotic type
Pre-60S particles
Helicases
132516820 (MTREX)
Transfer RNA biogenesis [BR:
lalb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132516820 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
132516820
NCBI-ProteinID:
XP_059998939
LinkDB
All DBs
Position
3:42400607..42528850
Genome browser
AA seq
1085 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKRFDGKLQSESTNIGKN
KRDADFEGTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIIIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKSVPLGVAAEADSLMAGSLFILILSSPQDAPSGVASVAD
GCSILWQPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKSDEKGEMQVVPVLVHLLS
AISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQGLKKVIQKV
EAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAMDIKSAKRELKKARTVLQMDELKCRKRV
LRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQEN
SSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGA
TFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFSEGITKIKRDIVFA
ASLYL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggggatgagctcttcagcgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggagaaggggaaatggaaggggccgccagggtctgcggaa
aaggccggaaaacgttttgatggtaaattacaatctgagtcaactaatattggaaaaaac
aagagagatgcagacttcgagggcacagatgaacccatttttggaaagaagcccagggta
gaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaaggtacaa
tcagttgaaactgtcgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgcgttggaaaagctgcaaaggaatacccgttcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttctagtatctgcacat
acatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagggaaaaa
cagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgttgtgtgggaagaaactattattttgcttcctgataatgttcactatgtctttctt
tcggctactattccaaatgcccggcagtttgctgaatggatttgccacttacacaaacag
ccttgtcatgtaatttacacagattatcggcctactccattacagcactacatttttcca
gcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggagaaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctac
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaa
gtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcaggttgaa
catgtacttcctctcttgaagaggggcattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaacgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatgtctggt
cgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagatgaaaag
atgagcccaacaattggaaaacaactacttaagggctcagctgatccactaaatagtgct
ttccatttgacctacaacatggtcttgaacttactacgagtagaagaaataaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaataataataccaaatgaagaaagt
gtagtcatctattataagattaggcagcagcttgccaaattgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaatcaaat
gttaagagtgtaccattgggggtggctgcggaggctgatagcttgatggcaggcagcctg
tttatcttgatcctgagttcccctcaggatgcaccatcaggggtggcttcagtggctgat
ggctgcagcattctttggcagcctaattctggtgaactggatcctttatatgtagtggaa
gtacttctgcgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaacca
gctaaatctgatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtct
gctatcagcagtgttaggctttacattcctaaagaccttcgaccactggacaatagacag
agtgttttaaaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttatta
gatcctattgatgacatgggcattcaagatcaaggactgaaaaaagtcatccagaaagta
gaggcttttgagcatcgaatgtattctcatccacttcacaatgatccaaatctggaaact
gtgtatacgctttgtgaaaaaaaagcacagattgcaatggacattaaatccgcaaagcga
gaactaaagaaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgtt
ttaaggaggttgggatttgctacgtcttctgatgtcatagagatgaaaggacgagtggct
tgtgaaataagcagtgctgatgagctccttctaactgagatgatgtttaatggccttttc
aatgacctatcagcagaacaggcaacggcactactaagctgctttgtgtttcaagagaat
tctagtgagatgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaa
tgtgctaaaagaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagact
tacctaagctcatttaaacctcacttaatggatgtagtatatacctgggcaactggagct
acatttgcccatatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatg
aggcgcctggaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacact
gagctggaaaataaattttcagaaggaatcaccaaaatcaagagagatattgtgtttgct
gccagcctctacctataa
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