Lagenorhynchus albirostris (white-beaked dolphin): 132517496
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Entry
132517496 CDS
T10760
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03013
Nucleocytoplasmic transport
lalb03015
mRNA surveillance pathway
Brite
Enzymes [BR:
lalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132517496 (UPF1)
5.6.2.5 RNA 5'-3' helicase
132517496 (UPF1)
Messenger RNA biogenesis [BR:
lalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132517496 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132517496 (UPF1)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
132517496
NCBI-ProteinID:
XP_060000805
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Position
3:160054106..160090311
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AA seq
1127 aa
AA seq
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MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtgggcctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagtctcaaggacatt
aactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggaccttgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacattttcggtcctctggtcaagctggaggctgactatgataagaaactgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgcacccgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacctttgct
gtggacgagacctccgtgtcgggctacatctaccacaaacttctcggccacgaagtggaa
gatgtgatcatcaagtgccagctgcccaaacgcttcacggcgcaggggctccctgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacaggaaagacggtgacctcagccaccattgtctaccacctggctcgg
caaggcaatgggcccgtgcttgtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagccgagaggcc
atcgattccccggtgtcattcttggccctgcacaaccagatcaggaacatggacagcatg
ccggagctccagaagctgcagcagctgaaggatgagactggcgagctgtcgtctgcggat
gaaaagcgataccgggccctgaagcgcactgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcagttccga
tccattttaatcgacgagagcacccaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgtcccatccgcctgcaggtccagtatcggatgcatcctgcgctcagtgccttc
ccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccggataaaccgatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgctgaaggcgggcgccaagccagaccagatcggc
atcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcagttcagtggc
tccctgcacaccaagctctaccaggaggtggagattgccagcgtggatgcgttccagggc
cgcgagaaggacttcatcatcctttcctgtgtgcgggcgaatgagcaccaaggcattgga
tttttaaacgaccccaggagacttaatgtggccttgaccagagcacgatatggggtcatt
attgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccaggatccgtctatgaccggagcagc
cagggccggccctcgaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaatgggccagccgcaggccggggcacccca
aaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagc
cagacgaatctccccaatagccaggccagccaggatgtggcgtcacagcccttctcacag
ggcgctctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaagtcacagatt
gatgtggcgctgtcgcaagactccacgtaccagggggagcgggcataccagcacggcgga
gtgacggggctgtcccagtattag
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