Lagenorhynchus albirostris (white-beaked dolphin): 132517496
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Entry
132517496 CDS
T10760
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03013
Nucleocytoplasmic transport
lalb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132517496 (UPF1)
03015 mRNA surveillance pathway
132517496 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalb03019
]
132517496 (UPF1)
Enzymes [BR:
lalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132517496 (UPF1)
5.6.2.5 RNA 5'-3' helicase
132517496 (UPF1)
Messenger RNA biogenesis [BR:
lalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132517496 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132517496 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132517496
NCBI-ProteinID:
XP_060000805
LinkDB
All DBs
Position
3:160054106..160090311
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtgggcctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagtctcaaggacatt
aactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggaccttgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacattttcggtcctctggtcaagctggaggctgactatgataagaaactgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgcacccgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacctttgct
gtggacgagacctccgtgtcgggctacatctaccacaaacttctcggccacgaagtggaa
gatgtgatcatcaagtgccagctgcccaaacgcttcacggcgcaggggctccctgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacaggaaagacggtgacctcagccaccattgtctaccacctggctcgg
caaggcaatgggcccgtgcttgtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagccgagaggcc
atcgattccccggtgtcattcttggccctgcacaaccagatcaggaacatggacagcatg
ccggagctccagaagctgcagcagctgaaggatgagactggcgagctgtcgtctgcggat
gaaaagcgataccgggccctgaagcgcactgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcagttccga
tccattttaatcgacgagagcacccaggccaccgagccagagtgcatggtccctgtggtc
cttggagccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgtcccatccgcctgcaggtccagtatcggatgcatcctgcgctcagtgccttc
ccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccggataaaccgatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgctgaaggcgggcgccaagccagaccagatcggc
atcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcagttcagtggc
tccctgcacaccaagctctaccaggaggtggagattgccagcgtggatgcgttccagggc
cgcgagaaggacttcatcatcctttcctgtgtgcgggcgaatgagcaccaaggcattgga
tttttaaacgaccccaggagacttaatgtggccttgaccagagcacgatatggggtcatt
attgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccaggatccgtctatgaccggagcagc
cagggccggccctcgaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaatgggccagccgcaggccggggcacccca
aaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagc
cagacgaatctccccaatagccaggccagccaggatgtggcgtcacagcccttctcacag
ggcgctctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaagtcacagatt
gatgtggcgctgtcgcaagactccacgtaccagggggagcgggcataccagcacggcgga
gtgacggggctgtcccagtattag
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