Lagenorhynchus albirostris (white-beaked dolphin): 132517692
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Entry
132517692 CDS
T10760
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132517692 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalb03019
]
132517692 (XAB2)
03041 Spliceosome [BR:
lalb03041
]
132517692 (XAB2)
Messenger RNA biogenesis [BR:
lalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132517692 (XAB2)
Spliceosome [BR:
lalb03041
]
Complex B
Other components
Prp19-related factors
132517692 (XAB2)
Complex C
132517692 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
132517692
NCBI-ProteinID:
XP_060001339
LinkDB
All DBs
Position
3:165559027..165568738
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AA seq
853 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFHSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVTGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAEQDQPSRAQSKILFVRSDASREELAQLAQQANPEEIELGEDEDEMDLEPNEVRLEQQ
SVPAAVFGSLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcctctcgaggcccgagcggccggaccttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctctatgagcgggca
ctgaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcgcgccgggca
caggtgaagcatcgctgtgtgaccgaccctgcctacgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcgccgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagaccgctgtgcggggttaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcagtgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggactttacccaagtgttcgacagctatgcc
cagttcgaggagagcatgatcgcggcgaagatggagacggcctcggagctggggcgggag
gaggaggacgacgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcacgagggccgcccgagggagatcattaacacgtacacggag
gccgtgcagactgtggaccccttcaaggccaccggcaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcatcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcgaaaggcgacg
gcgctgcccgcccgccgcgccgagtacttcgacggctcggagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcaatgctggccgacctggaggagagcctcggcaccttc
cattccaccaaagccgtctatgaccgcatcctggacctgcgcatcgccacgccccaaatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaagagagcttcaaggca
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcgctggatggctgccctcccaaatacgcaaagaccctgtacctgctgtacgcg
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgcgccacc
agggccgtggagcccgcccagcaatacgacatgttcaacatctacatcaagcgggcggcc
gagatctacggggtcacccacacccgcagcatctatcagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaagctcggggag
atcgaccgcgcccgggccatctacagcttctgctcgcagatctgtgacccccggacgacc
ggggccttctggcagacgtggaaggacttcgaggtccggcacggcaatgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcccagatgctcaaggtgacgggcagcgccacgggcactgtgtccgacctggcc
cccgggcagagcggcatggacgacatgaagctgctggaacagcgggccgagcagctggcg
gctgaggccgagcaggaccagccctcgcgggcccagagcaagatcctgtttgtgaggagt
gatgcctcccgggaggagctggcccagctggcccagcaggccaacccggaggagatcgag
ctgggcgaggacgaggacgagatggacctggagcccaacgaggtgcgcctggagcagcag
agcgtgccggccgccgtgttcgggagcctgaaggaagactga
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