Lagenorhynchus albirostris (white-beaked dolphin): 132520339
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Entry
132520339 CDS
T10760
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb05014
Amyotrophic lateral sclerosis
lalb05022
Pathways of neurodegeneration - multiple diseases
Brite
DNA repair and recombination proteins [BR:
lalb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132520339 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
132520339
NCBI-ProteinID:
XP_060005079
LinkDB
All DBs
Position
1:complement(87745630..87822031)
Genome browser
AA seq
2445 aa
AA seq
DB search
MAADKGAGSAEAVERVLPVLLVPVPAEATGRLGSRAQLHREQEVLGSLTAAGSLHVLPLA
PGGRGGGGCRLEGPFRQFVWEDSHNSGTPTDKPRLLALSENNALLICEFSLKDGRCDATI
SYSYTEETLQKLVEDQIISISLLSLRILSFHSNTSLLFINEYIILHIIFPERDAEIRVLS
CFTLSLPAQAVDRIIDTQLCRGILFVLSRLGWIYIFDTVDGRHVAHVDLALPQEDMYNEQ
QQEPAKSSSFTSLKVSQDLDVVVIVSSSNTAIALNLNLYFRQYPGHLLCERTLEDIPIEG
PKGIDEDDPVNSDYNMKLTKFSFQVDRSWKAQLSSLNETIKNSKLEGTCCAPWFQDILHL
EPPESGNHSTSVPNWAFTPQDVMCSQYSFPQKGPVKTSDSGRSWKRIHISEQEEPFELTC
MSVTGFTALFTWAVERTGCTIVLWDLETQSMQRFSLGKKCIPVDSGGDQQLCLVLTEDGL
SLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQLDTVDFFL
KSKENLLSPSSKSSVPDQFDHFPSHLYLKHVEELTPALDLLCSAIRENDSETQSKHFSEQ
LLNLTLSFLNKQIKELFIHNEGLDEHLQKGVNILTSYINELRTFMIKFPWKLTDAIDEYD
VNENVPKVKESNIWEKLSIEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIRIGLDLV
FDNLKKNNIKEASELLKNMGFNVKDQLLKICFYTTDKNIRDFLVEILKEKNYFSEKEKRT
IDFVHQVEKFYSGYFQENMQIQSFPRYSIKEQDFFKHKSVLDSFLKYDHKDTDKLNKQDH
RIVLTWAQWWNQLTQESILLPRISPEEYKSYSPEALWGYLTARHDWFSITLWIGEFQTRN
RFASLQQNKWPPLTVDVVDQNTCCNNYMRNEILDTLARNGIFLTSELEDFELFLKRLNRI
GGVMQDTLPVQNYRSKDGWDFHCHFILYCLEHSLQYLLYVFLDYYKLSPPNCPFLEKKEL
HEAHPWFEFLVQCRQVSRNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLALAT
TMYAPGGVSQVVQNEENENCVKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLPPDITLY
HLIQSLLPFDPSRLFGWQSANTLTIGDAASQLPHFSSPDLVNKYAIVERLNFAYYLHHGR
PSFAFGTFLIQELTKSKTPKQLIQQVGNEAYVLGLSSFHIPSIGAACVCFLELLGLDSLK
LRVDMKVANIILSYTCRNEDAQYNFIRESLAEKLSKLAMGEKSTIEELLVLLEEGIWDSI
QQQEIKRLSSESSSQWALVVQFCRLHNLKLSTSYLRECAKANDWLQFIIHSQLHNYHPEE
VKSLLQYFSPVLQDHLRLAFENLPSVSKSRMDSDQVCNKSPQELQRNKVEMTDFFEILLQ
CSEVPNSWCWLLAEAVKQQAPILSVLASCVQDASAIPCLCVWIITSVEHSVAAEAMGHIQ
DSMEGHTWDLEDLSVIWRTLLTRQKSKTLIRGFQLFFKESPLLFMMEMYELCMFFKNYEE
AEAKLLEFQKSLETLETASTRVHAIIPAPWLKEHVYFLLKLMLQQCRTQYELGKLLQLFV
GREHLFSDGKTILTGPDVKKLCVLSQILKDTSIAINRVIITSYSLENFQHECRSILEKLE
TDGYFALARRVAELAELPVDNLIIEEITQEMQTLKHIDQWSLKQARIDFWKKCHENFKKN
SISSKAASSFFSAQALMACECPAEEGPSSTEERHLLLTLAGHWLAQEDLVPLEELEELEK
QIWLCRITQHTLRGSQEEIGPGCSQQISTSGELSFESLASEFSFSKLAALNTSKYLELNG
LPSKDTCENKLNWKEQESLNFLIGRLLDDGCVHEASRVCRYFHFYNQDVALVLHCRALAS
GEASVDDLHLDIHALLQSPELLEEEEEPGVPLRKVQSTSSLDSQSFVILPPSGEVVTTLE
TLTSKCLHGKNYCRQVLCLYALAKELGCSYTDVAAQDGEAILRVILASQQPDRCKRAQAF
ISTQGLEPDTVAELVAEEVTRELLTPSEGTGHKQTFTPTEESQTFLQLTALCQDRTLVGM
KLLDKISSVPHGDLSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPNEEYGL
VVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKH
NMIALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAES
YAKDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLGRHRLMDCIMALPRFYQASIVA
EAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLRSSIFEEISIKCKHHQPTDLAVKNL
KKLLTYCEDVYLYYKLAYEHKFYDVVNVLLKDPQTGCCLKDMLAG
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaagggggctggaagcgctgaagccgtggagcgggttctacccgtgttg
ttggtgccggtccccgccgaggcaacagggcgtctgggatcccgggcgcagttgcacagg
gagcaggaggttctggggagcttgacggctgcaggcagccttcacgtgcttcccttggcg
cccggcggccggggcgggggcggctgccgcctggaaggcccttttcggcagtttgtatgg
gaggactctcataacagtgggacaccaacagacaagcccagactgcttgctcttagtgaa
aataatgcactgctcatctgtgaatttagtttgaaagatggaagatgtgatgcaaccatt
tcatatagctatactgaggagacattgcaaaagctcgttgaagatcaaattatcagtatt
tccttattatctttgagaattctgtcatttcacagtaacacatcattattgttcatcaat
gaatatatcatcctgcacattatatttcctgaaagagatgctgagattagggtactcagc
tgtttcacattatccttacctgcacaggcagtggacaggattattgacacacagctctgc
agaggaattctttttgttttgagtcgtttaggctggatctacatttttgacactgtggat
ggtagacatgtagctcatgtggatttggcacttcctcaagaagatatgtataatgagcag
caacaagagccagccaagagttcttcctttacttcattgaaagtgtctcaagacctagat
gttgtagtgattgtcagctcctccaacactgcaattgctcttaacttaaatttgtatttc
aggcaatacccaggacacctactatgtgaaagaacactagaagacattcctattgaaggc
cctaaggggatagatgaagatgatcctgttaattctgactacaacatgaaactgacgaag
ttttccttccaagttgatcggtcttggaaagcccagctgtcatcactgaatgaaacaata
aagaactccaagctggaaggtacctgttgtgctccgtggttccaggatattttgcatttg
gagccccctgaatctggtaaccacagtaccagtgtgccaaactgggccttcactccacag
gatgtaatgtgcagccagtatagttttccacagaaaggtcctgtcaagaccagtgattca
ggaagatcatggaaaagaatacacatcagtgaacaggaggaaccctttgagcttacatgt
atgtctgtgacaggcttcactgcactgtttacttgggcagttgaaaggacgggctgtacc
attgtcctgtgggatctggagacccagagcatgcagcgtttttcgctgggcaagaagtgt
attcctgtagacagtggtggagaccagcaactgtgccttgttttgacagaagatggactc
tctctgattttgtttggtttgactcaagaggaatttttaaataggctaatgatccatgga
agtgccagcactgtggactctctttgccatctcaatggttgggggaggtgctccatcccc
atacatgcgctagaggcaggaatagaaaatcgtcagctggacacagtagatttctttttg
aagagcaaggaaaatcttttgagtccatcctcaaaatcttctgtacctgatcagtttgat
cactttccatcccatttatatttaaaacatgtggaagagctgacaccagcattggattta
ctttgctcagcaattagagaaaatgattctgaaacccagagcaaacacttttcggaacag
ttgcttaatcttacactgtctttccttaacaaacaaataaaggagctttttattcacaat
gaagggctagatgaacatctacagaaaggagtgaacattttgaccagctacattaatgaa
cttcgaaccttcatgataaagtttccttggaagctaacagatgctatagatgaatatgat
gtaaatgaaaatgtccccaaagtaaaggagagcaatatatgggagaagctcagcattgag
gaagttattgccaatgccattttaaacaacaaaataccagaggcacaaactttcttcagg
attaacagtcattctgctcaaagactcgaggagttgattagaataggcctagatttggtc
tttgacaatttgaaaaagaataatataaaggaagcctctgagcttttgaagaatatgggc
tttaatgtaaaagaccagttgctcaagatatgcttctatacaactgataaaaacatacgg
gactttttggttgaaattttaaaagaaaaaaattatttttctgaaaaagaaaaaagaact
atagacttcgtgcatcaagttgagaagttttattcaggatatttccaagaaaatatgcag
atccagtcttttcccaggtattcgataaaggaacaagattttttcaagcacaagtctgtt
ttggactcattcctgaaatatgatcataaagatacagataaacttaacaagcaagatcac
agaattgtgttaacttgggctcagtggtggaatcaactaacacaagaatccatccttctc
cccaggataagtccagaagaatacaaatcatattctcccgaagccctctggggatacctc
acagctcgccatgattggttcagcattaccttgtggattggagaatttcagacccggaat
agatttgcctcacttcagcagaacaaatggccccctctgactgttgacgttgttgatcag
aatacttgctgcaacaactacatgaggaatgaaattttagatacgctggccaggaatgga
atttttcttacatctgaactagaagactttgaactctttctcaaaagactgaaccgtatt
gggggcgtgatgcaagataccctccctgttcaaaactataggtccaaagatggttgggat
ttccattgtcacttcattctctattgtttggaacacagtctgcagtatcttctttatgtc
tttcttgactattacaaacttagtcctccaaattgtccctttttggaaaaaaaagaatta
catgaagctcacccttggtttgaatttttagtccagtgtcgacaagtttccagaaattta
acagatcccaaactgatcttccaggctagccttgcaaatgctcagatactgattcccagc
aaccaggccagtgtaagcagtatgctattggaaggacataccctcctggcccttgctacc
acaatgtatgcccctgggggcgtcagccaggttgttcagaatgaagaaaatgagaactgt
gtgaagaaagtagatccccagctactgaagatggcattaactccttaccccaagcttaaa
actgctctcttcccacagtacactgcccctagtgtcctgccaccagatattacactctac
cacctgattcagtcattattgccctttgatcctagcagattgtttggctggcagtctgcc
aacacactgactataggagatgcagcgagtcagctcccacatttctctagccctgacctg
gttaataaatatgctatagtagaacgtctgaattttgcttattatttacatcatggacga
ccatcgtttgcgtttggtacttttctgattcaggaattaaccaagagcaagacccccaag
cagctaatccagcaagtaggcaatgaagcctatgttttagggctctcctccttccacata
ccatcaataggagctgcctgtgtttgtttcttagaactgcttggcctcgacagcctcaag
ctcagagttgatatgaaagtggccaatataattttgagctacacgtgtagaaatgaagat
gctcagtacaactttatcagagagtctctagctgaaaaactatctaaactggctatgggt
gaaaagtcaaccatagaagaattgcttgttctcttagaagaaggtatatgggacagcatt
cagcagcaggaaataaagaggttatccagtgaatccagcagccagtgggcattagtggta
caattctgcaggctccacaatctgaaactgagcacctcttaccttagagaatgtgccaaa
gcaaatgattggttacagtttattattcacagccaactccataattaccacccagaggag
gtgaaatctcttctccaatatttcagccctgttcttcaagaccacttaagactggctttt
gagaacttgccctcagtgtccaagtctagaatggacagtgatcaagtctgcaacaagtcc
ccgcaggaactgcaaagaaacaaagtagagatgactgatttctttgaaattctgcttcag
tgctcagaggtgccaaactcctggtgctggctcctggcagaagcagtgaaacaacaggcc
ccaatccttagtgtcctggcctcatgtgtccaggacgccagtgctattccttgcctctgt
gtttggatcatcacttctgtggagcacagtgttgcagctgaagcaatgggacacattcag
gactcaatggagggccatacttgggaccttgaggacctctcagtcatctggaggacatta
ttaacacggcagaagagcaaaactctcatcagaggtttccagcttttctttaaggagtcc
ccattactcttcatgatggagatgtatgaactgtgtatgttcttcaagaattatgaggaa
gccgaagctaaacttctggagttccagaagagccttgaaactcttgaaacggcttccaca
agggtccacgctatcattcctgccccatggctgaaggagcatgtgtattttcttttgaag
cttatgctgcagcagtgtaggacccagtatgagctggggaagcttttacagctgtttgtt
ggaagagagcatctcttctctgatggtaagacaatacttacaggtccagatgtgaagaag
ctgtgtgtccttagccaaattttgaaggatacatccatagccattaatcgtgtaattatt
accagctacagccttgagaattttcagcatgaatgtagatcaattttagaaaaactggag
acagatggatactttgctttggccagaagggtagcagaactagctgagctacctgtggat
aacttgattattgaagagataacacaggaaatgcagaccttaaaacacattgaccagtgg
tccctgaaacaagcaagaattgatttctggaaaaaatgtcatgagaattttaagaaaaat
tccatttcaagcaaagcagcttcttcctttttctcagcccaggctcttatggcatgtgag
tgcccagctgaagagggaccaagcagcactgaggagcgccatctgctcctcactctggca
ggacactggcttgcccaggaggacctggtgcctttggaggagctggaggagctagagaag
cagatctggctctgccgcatcacccagcacaccctcaggggaagccaggaggaaataggc
cccggatgttctcaacagatttcaactagtggtgaactttcctttgaaagcttagccagt
gagttttcattctctaagttggctgctctgaacacatcaaaatatttagaattgaatggc
cttccatccaaagacacttgtgagaacaaactgaactggaaggagcaggagtccctaaac
tttttgattgggcgcctattggatgatggctgtgtgcatgaagcaagtagagtatgccga
tattttcatttctataaccaagatgttgccttggtgttgcattgcagagcactagcttca
ggggaagctagtgtggatgacctgcacctggacatccatgctctcttacaaagtcctgag
ctgcttgaggaagaagaagaacctggcgttcctctaaggaaagtccaaagcacttcaagt
ttggacagtcagtcatttgtgatactgccccccagtggtgaagtggtgactactctggaa
actctgacaagcaaatgcctccatgggaagaattattgccggcaggtcctctgtctctat
gcacttgccaaggagttgggctgttcctacacagatgtcgctgcccaggatggtgaggcc
attctccgggtaatcttggcctctcagcagcctgaccgatgcaagcgagctcaagccttc
atcagcacccagggcctcgagccagacacagtggctgaacttgtggctgaagaggtgacc
cgggagctgctgaccccatcagagggaacaggacataagcagacgttcaccccaacagag
gaaagccagacgtttcttcagctgactgctctgtgtcaagaccgcaccttggtaggcatg
aagttgttggataagatttcctccgttccccatggggacttgtcttgcaccacagagctg
ctgatcctggctcatcactgcttcacactgacatgccacatggagggcatcatccgagtc
ctgcaggccgcccggctgctcacagacaaccacttggcccccaatgaggagtacggactg
gtggtgcgtctcctcactggcattggaaggtacaatgagatgacatacatatttgatttg
ctgcataaaaaacactactttgaagtgctgatgaggaagaaattggacccgagtggtacc
ctgaagacggccctactggactacatcaaacgctgccgccctggggacagtgagaagcac
aacatgattgccctgtgtttcagcatgtgccgggagattggggagaaccatgaggcagct
gcctgcatccaactgaaattgattgagtctcagccctgggaggacagcctcaaggatggg
caccaactgaagcagctgctgctgaaggccctgactctgatgctggatgcagcagagagt
tatgccaaggactcctgcgtgcgacaggccctgcactgtcaccggctcaccaagttgata
acactgcagattcactttctgaacaccggccagaacacaatgctcatcaacctgggccgc
cacaggctgatggactgtatcatggccctacctcggttctaccaggcttctattgtggct
gaggcctatgactttgttcctgattgggctgaaattttataccaacaagtgattcttaaa
ggagactttaattacctggaagaatttaagcagcaaaggttattaagatccagtatattt
gaagaaatttcaataaaatgtaaacatcatcagcctactgacttagctgtgaaaaacctg
aagaagttactcacatattgtgaagacgtctacttgtattacaagctggcatacgaacac
aaattttatgacgttgtaaatgtgcttctgaaggaccctcagacaggttgctgtctaaag
gacatgctagcaggttag
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integrated database retrieval system
