Lagenorhynchus albirostris (white-beaked dolphin): 132522039
Help
Entry
132522039 CDS
T10760
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb04151
PI3K-Akt signaling pathway
lalb04382
Cornified envelope formation
lalb04510
Focal adhesion
lalb04512
ECM-receptor interaction
lalb04820
Cytoskeleton in muscle cells
lalb04926
Relaxin signaling pathway
lalb04933
AGE-RAGE signaling pathway in diabetic complications
lalb04974
Protein digestion and absorption
lalb05146
Amoebiasis
lalb05165
Human papillomavirus infection
lalb05200
Pathways in cancer
lalb05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
132522039 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132522039 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132522039 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132522039 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
132522039 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
132522039 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
132522039 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
132522039 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
132522039 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
132522039 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
132522039 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
132522039 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lalb04147
]
132522039 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
lalb00536
]
132522039 (COL4A4)
Exosome [BR:
lalb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132522039 (COL4A4)
Glycosaminoglycan binding proteins [BR:
lalb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132522039 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132522039
NCBI-ProteinID:
XP_060007939
LinkDB
All DBs
Position
6:11545588..11680198
Genome browser
AA seq
1686 aa
AA seq
DB search
MALVRRSFRWIKPLATDSWLLVLILFSVQHAYGGGKKFIGPCGGRDCSLCQCFPEKGSRG
QPGPPGPQGPIGPLGPPGPIGIPGEKGMRGDSGLPGAAGDKGDKGPTGVPGFPGLDGIPG
HPGPPGSRGKSGIDGYNGSRGAPGFPGERGAPGPQGSPGLLGKKGEKGNSVFILGVIKGI
QGDRGDPGPPGLPGSRGVRGPAGPVGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQMGDP
GEVGQQGSPGPTLLVQPPDSGLYKGAKGIKGMPGIIGPPGPPGPKGEPGIGTKGEKGIPG
FPGPRGDPGFYGSPGFPGLKGEPGVFGDPGPFGFLGPKGDPGDRGHPGPPGVLATPALPL
KGPPGDPGHPGRYGEMGAVGPPGPPGPPGRPGEVCAGMMGPPGPRGFPGHPGFPGAAGIP
GRADSAPGKPGNQGPPGLPGVPGLPGPPGSDVVYCSAGPPGPQGIKGKVGPPGRRGSKGE
KGNTGLCACQPGPSGPPGPPGLPGRQGSKGDLGLPGRLGEKGYPGLPGARGSPGPPGRPG
TSGPPGSKGEKGDLVVSRVKGHKGERGPDGPPGFPGQQGQHGRDGYAGEKGDPGPLGDHE
DAAPGDKGPPGPPGPPGRAGPRGPPGLGFPGPPGERGQPGAPGCPGKRGPDGWKGQKGDT
VPCNVTYPGRPGPPGFDGPPGPKGFPGRRGAPGLRCLDGEKGQRGKPGISGIPGPPGFHG
DMGDPGFGGEKGSSPVGPPGSPGSPGVNGQKGPPGDSAIGYAGPPGKRGLLGVPGSKGLR
GDPGRPGAAGPAGMLGFLGLKGPKGREGSAGFPGIPGPPGHSCERGAPGRPGPPGLPGAP
GSPGAPGWKGQQGDMGPPGPAGMKGLPGVPGRPGADGPPGPPGVPGPSGDDALPGLPGPK
GPQGLPGFLGFPGERGKPGPDGHPGRKGEHGEQGWPGSLGDRGVKGDKGARGPPGYEGEM
DIILKKGETGEPGPPGDGGFPGEEGDKGHPGIQGKKGEPGSCGPPGFHRGEPGRKGQPGL
PGPPGPPGSPGLRGLIGFPGFPGDQGEPGSPGPPGLSGIDGTRGPKGYKGEPASQFGLPG
PKGEPGSPGYPGHLGAPGEQGLPGVQGPGGPPGRPGPPGSSGPAGCPGNPGLPGLQGHPG
EMGDPGPRGLVGDPGAPGLPGIKGPSGSPGLNGLHGLKGQKGSKGASGSHKTGPPGPVGM
PGPKGETGDPGSPGISPPGLFGDKGPPGPPGRPGPPGPAGAPGRALKGDIPDPGLPGDQG
PPGPSGPRGIPGPPGPPGRVELLKGEPGDCGLPGPPGPPGPPGPPGRKGFPGCDGKDGQK
GPMGFPGLQGPPGTPGPPGEKGLPGPPGRQGPLGPPGKLLMPGPPADVDACPRIPGLPGV
PGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHKGDMGEAGCPGVP
GPPGPVGDPGPEGFGPVYPSGFLLVLHSQTDGEPTCPAGMPRLWTGYSLLYLEGQERAHN
QDLGLAGSCLPMFSTLPFAHCNIHQACQYARRNDRSYWLASAAPLPMTPLSEEEIRPYIS
RCAVCEAPAQAVAVHSQDQSVPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLE
DFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTLKESQAQRQKVSRCQ
VCVKHS
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggcattggtaaggcgctctttcaggtggatcaagcccttggccacagattcctggttg
ctcgtacttattctcttttctgtacaacatgcgtacgggggtggaaagaagtttattggt
ccctgcgggggaagagattgctctctttgccagtgctttcctgaaaaggggtctcggggt
caaccaggaccaccggggccacagggtcctattggacccctggggccaccaggacccatt
ggaattccaggagagaaagggatgagaggtgacagtggccttcctggagcagcaggtgac
aagggtgataagggtccaaccggtgttcctggattcccaggtttggatgggatacctggg
cacccagggcctcctggatccagaggcaaatctggcatagacggttacaacggctcaaga
ggtgctccaggctttccaggagaaagaggagctcctggcccacaaggctccccaggcctt
cttgggaaaaaaggagaaaaaggaaattcagtgttcattttaggtgtcattaaaggtatt
cagggtgacagaggggacccaggacctcccggcttaccaggctcaaggggagtgagagga
ccagcaggcccagtgggatatccaggagagccggggttggcaggacctccaggccctcct
gggagtccaggtttgaagggtaatcctggcgtgggagtaaaggggcaaatgggagacccg
ggtgaggttggccagcagggttctccaggacccacccttctggtgcagccacctgattct
ggtctctataaaggagcaaagggtattaaaggaatgcctggaatcattggacctcctgga
ccaccaggacccaagggggagcccggtattgggacaaaaggagagaaaggtattcctggg
tttccaggacctcggggggaccctggcttctatggctctccaggttttccaggattaaag
ggggaaccaggagtgtttggagatcctgggccgtttggatttcttggtccaaagggagat
cctggagaccgcgggcacccaggaccaccaggggttttggcaactccagctcttccactc
aaagggcctccaggggatccagggcaccctggccgctatggagaaatgggggctgttgga
ccacctggtccccctggtccccctggtagaccaggcgaagtctgtgcaggcatgatggga
ccccctgggccacgagggtttcctggtcatccaggatttccaggggcagctggtattcct
gggagagctgattctgctccagggaaaccaggcaaccagggaccacctgggttgcctgga
gtgccagggttgccgggacctccaggatcagatgttgtatattgtagtgctgggcctcct
gggccacaaggaataaaaggcaaagtgggtccaccaggaagaagaggctcaaaaggagaa
aaaggcaacacagggctctgtgcctgccagcctggtccctcaggcccacccggccctcca
ggacttcctgggaggcaagggagtaaaggagacttgggactccctgggcgacttggagaa
aaaggttacccaggccttcctggtgccagaggatctccagggccaccaggaagacctggt
acctcaggaccacctggcagcaaaggagaaaaaggtgacctggttgtatcaagagtgaaa
gggcacaaaggagaaagaggtcctgatgggcccccaggatttccggggcagcagggacaa
cacggtcgagatggatatgctggagaaaaaggggacccaggaccgctgggagatcatgaa
gatgcagccccaggtgataaagggcctcctggaccaccaggccccccgggcagagcagga
cctagggggcctccgggactgggatttcctggtccaccaggagagagagggcaaccagga
gctccaggctgcccaggcaagaggggccctgatggctggaagggtcagaaaggtgataca
gttccttgtaacgtaacctaccctgggaggccaggcccaccaggttttgatggacctcca
ggtccaaagggatttccaggtcgtcggggagctcctgggttgaggtgtctggatggggaa
aagggtcaacgtggcaaaccaggaatctcaggaatacctggtccacctggttttcatggt
gatatgggagatccgggttttggaggtgaaaaggggtcctcccctgtcgggcccccaggc
tctccaggttcacctggagtgaatggtcagaaaggacctccgggagactctgctattggc
tacgcaggacccccaggaaagaggggtcttttaggagtaccagggtcaaaaggactcaga
ggtgatcctggacgaccgggggctgcagggccagctggcatgctcggattcctgggtctc
aaaggtcccaaagggagagaaggaagtgctgggtttccagggatcccaggtccacccggc
cattcctgtgaaagaggcgctccagggagaccagggccaccagggctccctggagctcca
ggaagtccaggtgccccaggttggaaaggacaacaaggggacatggggcctcctggaccc
gctggaatgaagggcctacccggagtcccaggacggccaggggcagatggacccccaggg
cccccgggagtcccaggccccagtggggatgatgcgcttcctggtcttccaggcccaaag
ggaccccaggggctacccggcttcctgggttttccgggagagagaggaaaacctggcccg
gacggacaccctggcagaaagggagaacacggagaacagggttggcccggctccctggga
gaccgaggagtgaaaggtgacaaaggagcaagaggacccccaggatatgaaggagaaatg
gatattattttgaaaaagggggaaaccggggaacctggacctcctggagatggtggattc
ccaggagaagaaggtgataaaggccatcctgggatacaagggaagaaaggagagccagga
agctgtggaccacctggatttcacagaggggagcccgggaggaaagggcagccaggcctt
cctggacccccaggccctccaggctcacctgggctgagagggctcattggctttccggga
tttccaggtgaccagggtgagccaggttctccagggccccctggactttcaggaatcgat
ggtacaagaggacctaaaggatacaaaggggaacctgcaagtcagtttggcctacctggt
ccaaagggtgagccaggtagccctggatatccaggacatttgggagcacctggagagcag
ggcttgcccggtgttcaaggacctggaggaccacccggaaggccaggaccgcctggctcc
tctggaccagcggggtgtccaggtaatccaggactgcctgggctgcagggacatccagga
gaaatgggagatcctgggccaagaggcctcgtgggggatccaggggcaccaggtcttccg
ggaataaaaggtccctccgggtcgcccggcctgaacggcttgcacggtttaaagggtcag
aagggcagcaaaggcgcttcaggttcccataaaacgggcccacctggtccagtgggaatg
cctgggccaaaaggcgagacaggagaccccgggagcccaggaatttctcctccaggactt
ttcggagacaaaggtcccccaggtcccccagggagacctggaccgcctggtcctgcaggt
gccccaggaagagctcttaagggtgacattccggacccgggtctgcctggagatcaggga
cctcctggccccagtggtccaagaggaatacccgggcctccagggccccctgggagggtt
gaacttctgaaaggtgaaccaggtgactgtggtctgccggggcctccaggtcccccaggc
ccaccaggccctccaggacgcaaaggcttcccaggatgtgatggaaaagatggccagaaa
ggaccaatgggattcccggggttgcaggggccacctggaactcctgggccacctggagag
aagggtttacctggacctccaggcagacaggggcccttgggtcctccaggtaagcttcta
atgcctgggccccctgcagacgtggatgcttgcccccgaatcccagggcttcctggggta
ccaggcccaagaggaccagaaggaaccatggggctccccggaatgagaggccccccagga
ccagggtgcaaaggagagcccgggctggatggcaggagaggcgaggatggccttccaggg
tcccctgggcctccgggacacaaaggtgacatgggagaagcgggctgcccaggagtacca
ggccctcctgggcccgtgggggatcctgggcccgaagggttcggccctgtataccccagt
ggcttcctcctggttctccacagtcagacagatggagaacccacctgccccgcgggcatg
cccaggctctggaccgggtatagtctgttatacctggaaggacaggagagagctcacaat
caagaccttggcctggcgggctcctgcctccccatgttcagcacgctgcccttcgcccac
tgcaacatccaccaagcgtgccagtacgcccggaggaacgacaggtcctattggctggcg
agcgccgcgccgttgcctatgacgccgctctcggaggaggagatccgcccgtacatcagc
cgctgcgccgtgtgcgaggcccccgcgcaagccgtggccgtgcacagccaggaccagtct
gtcccgccgtgtccgcgggcctggaggagcctctggattgggtactctttcctgatgcac
acaggtgctggggaccaaggaggcggccaggccctcatgtcacccggcagctgcctggag
gatttcagagctgcaccgttccttgaatgccaaggacgtcagggaacttgccactttttt
gcaaatgagtatagcttctggctgacaactgtgagacctgacttgcagttttcctcagca
ccctcaccggacaccttgaaagaaagccaagcccagcgccagaaagttagcaggtgccag
gtctgtgtgaagcacagctag
DBGET
integrated database retrieval system
