KEGG T10760: 132527062

Lagenorhynchus albirostris (white-beaked dolphin): 132527062

Entry

132527062         CDS       T10760

Symbol

SMARCC1

Name

(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1

K11649

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C

Organism

lalb Lagenorhynchus albirostris (white-beaked dolphin)

Pathway

lalb03082

ATP-dependent chromatin remodeling

lalb04714

Thermogenesis

lalb05225

Hepatocellular carcinoma

Brite

KEGG Orthology (KO) [BR:lalb00001]
09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    132527062 (SMARCC1)
09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    132527062 (SMARCC1)
09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    132527062 (SMARCC1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lalb03021]
    132527062 (SMARCC1)
   03036 Chromosome and associated proteins [BR:lalb03036]
    132527062 (SMARCC1)
Transcription machinery [BR:lalb03021]
Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     132527062 (SMARCC1)
Chromosome and associated proteins [BR:lalb03036]
Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    132527062 (SMARCC1)
   PBAF complex
    132527062 (SMARCC1)
   GBAF(ncBAF) complex
    132527062 (SMARCC1)

SSDB

Motif

Pfam:

SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 Chromo BRCT_2 DUF919 SpeFL

Other DBs

NCBI-GeneID:

132527062

NCBI-ProteinID:

XP_060018079

LinkDB

Position

10:40150754..40332039

AA seq 1105 aa
MAAAAGSGGLGATAGTAGLGGAAAAAGLAVYRRKDGGPTSKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDVEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPGKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDVYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAARAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPSYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDGQQPEKAENKGENEMDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDIGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMMSGQPMPGRMMSTVAANIHPPGSGPTPPGMPPIPGNILGPRVPLTAPNGMYPPPPQQ
QPPPPPPTDGVPPPPAPGPPASAAP

NT seq 3318 nt +upstreamnt +downstreamnt
atggccgcggcggcgggcagcggcgggctgggggcgacggcgggcactgcgggtctggga
ggcgcggcggcggccgcgggcctggcagtttatcgacggaaggacgggggcccgaccagc
aagttttgggagagcccggagacggtgtcccagctggattccgtgcgggtctggctgggc
aagcactacaagaagtatgttcatgcggatgctcctaccaataaaacactggctgggctg
gtggtacagcttctccagttccaggaagatgcctttgggaaacatgtcaccaacccggcc
ttcaccaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaaatataaaaatgaacagggatggcggaggtttgatctacag
aatccatcccgaatggatcgtaatgttgaaatgtttatgaacattgaaaaaacattggtg
cagagcaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaataaattgaaagatataatcaaacgacatcaggggacatttactgatgagaagtca
aaagcttcccaccacatttatccatatccttcctcacaagaggatgaagagtggttgaga
cctgtgatgagaaaagacaagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgtggaaattgaagatccaccaattccagaa
aagccatggaaggttcatgcaaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcccgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatcagct
aatgctcgaaagaggaaacattcaccttcccctccacctcccacacccacagaatcccgg
aagaagagcgggaagaaaggccaagctagtctttatgggaagcggagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaacata
gaggaggtggttcttccaaaaaatgtaaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtagcagatctagatgagcaggatgaagaaacagtcacaacaggagga
aaggaagatgaagatcctggcaaaggtgatcagagtcggtcagttgaccctggtgaagat
aatgtgacagagcagaccaatcacattattattcctagctatgcatcgtggtttgattat
aactgtattcatgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaacaaa
tccaagactccggagatatacttggcatatcgaaattttatgatcgacacataccgccta
aatccccaggaatatttaaccagcactgcttgtcggaggaacttgactggagatgtatgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctccgactcctcatttcaatgtattagct
gataccccctctgggcttgtacctctacatcttcgatcacctcaggttcctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacgtttactccaagaaaaccttagcaaagagtaaaggtgctagtgctgga
agagaatggactgaacaggagacacttctactgctggaggctctggagatgtataaggat
gactggaacaaagtgtcggaacacgttggaagtcgcacacaggatgaatgcatcctccac
tttttgaggcttcccattgaggacccataccttgagaattctgatgcttccctggggccc
ctggcctaccagcctgtccccttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggatcctcgtgtggcatctgctgcagccagagcagctttggaa
gagttttctcgagtccgggaggaggtaccactggaattggtggaagctcacgtcaaaaaa
gtacaagaagcagcacgagcctctgggaaggtggatccctcctatggtttggagagcagc
tgcattgcaggcacagggccagatgagccagagaagcttgaaggagctgaagaggaaaaa
atggaaacagatactgatggtcagcagcctgaaaaggcagaaaacaaaggggagaatgaa
atggatgaaggtgataaagctcaagatggagaaaatgaaaaaaatagtgagaaagaacag
gatagtgaagttagtgaagataccaaatcagaagaaaaggagactgaagagaacaaggaa
ctcactgatacttgtaaagaaagagaaagtgatattgggaagaagaaagtagaacatgaa
atttctgaaggaaatgtagccacagccgcagcagctgctcttgcctcagctgcaaccaaa
gccaagcacttggctgccgtggaagagagaaagatcaagtctctggtagctctcctggtt
gagacacaaatgaagaaactggagatcaaacttagacattttgaggaactggaaaccatc
atggacagagagaaagaagctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggaacagctgaaatacgctgagttgcgagcccgacagcaaatggaacag
cagcagcatgggcagaaccctcaacaggcacaccagcactcagggggacctggcctggca
ccactgggagcagcagggcaccctggcatgatgcctcatcagcagccccctccctaccct
ctgatgcaccaccagatgccgccgcctcatccacctcagccaggtcagataccaggtcca
ggttccatgatgtctgggcagcccatgccaggccgcatgatgtccaccgttgcagccaac
atccacccccctgggagtggccctacccctcctggtatgcctccaatcccaggaaacatc
ttaggaccccgggtacccctcacggcacctaacggcatgtatccccctccgccgcagcag
cagccacctcctccaccacctacagatggagtccctccgcctcccgctccaggcccacca
gcctcggctgcgccctag

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