Lagenorhynchus albirostris (white-beaked dolphin): 132527495
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Entry
132527495 CDS
T10760
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb03013
Nucleocytoplasmic transport
lalb03015
mRNA surveillance pathway
lalb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132527495 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
132527495 (DDX39B)
03015 mRNA surveillance pathway
132527495 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalb03019
]
132527495 (DDX39B)
03041 Spliceosome [BR:
lalb03041
]
132527495 (DDX39B)
Enzymes [BR:
lalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132527495 (DDX39B)
Messenger RNA biogenesis [BR:
lalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132527495 (DDX39B)
Spliceosome [BR:
lalb03041
]
Complex C
Other components
EJC/TREX
132527495 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132527495 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132527495
NCBI-ProteinID:
XP_060019291
LinkDB
All DBs
Position
10:81526620..81537207
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccattcacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacggcggtgtttgtg
ctggctacactgcaacagctggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgaacgcttctctaaatacatg
cccaacgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaagatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgcccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagctattgccatccaccgtggg
atgcctcaggaggagaggctttctcggtatcagcagttcaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacatcgccttt
aactacgacatgcctgaggattctgacacatacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgagaatgatgccaagattctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
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integrated database retrieval system
