Lagenorhynchus albirostris (white-beaked dolphin): 132529978
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Entry
132529978 CDS
T10760
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
lalb Lagenorhynchus albirostris (white-beaked dolphin)
Pathway
lalb04151
PI3K-Akt signaling pathway
lalb04510
Focal adhesion
lalb04512
ECM-receptor interaction
lalb04974
Protein digestion and absorption
lalb05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lalb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
132529978 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132529978 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132529978 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
132529978 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
132529978 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lalb00536
]
132529978 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lalb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132529978 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
132529978
NCBI-ProteinID:
XP_060023042
LinkDB
All DBs
Position
11:64643975..64674474
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLTTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMG
PRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGSDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPTGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGTRGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGAAGPGGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG
PVGKQGDRGEAGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPAGDQGTSGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTG
ETCVYPSPASVPKKNWWNSKSKDKKHIWFGETINGGFHFSYGDDNLAANTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataacgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcaccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga
cctcctggccctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggccctcctggcccccctggcccccctggtcttggtggaaactttgct
gctcagatggctggaggatttgatgagaaggctggtggcgcccagttgggagtaatgcag
ggaccaatgggccccatgggacctcggggacctccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggggaacccggcgttgctggtcccatgggt
ccccgcggcccttctggcccccctggaaaacctggtgacgatggtgaagctggaaaggct
ggaaaacctggtgagagaggccttcctggtcctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccaggtgtgaagggtgagagtggttccccgggagagaacggttctcca
ggcccaatgggtccccgtggcctgcctggtgagagaggacggactggccctgctggcgct
gcgggtgctcggggcaacgatggccaacctggccccgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccctggtgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcctgaaggcgcccagggtcctcgcggtgaagctggtactcctgggtcc
cccgggccggctggtgcctctggtaaccctggatctgatggaattcctggagctaaagga
tctgctggtgcccctggcattgctggtgctcccggcttccctgggccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctactggtccccaagga
gcccccggtcctgctggtgaagaaggcaaaagaggggcccgtggagagcctggtggtgct
gggcccgctggtccccctggagaaagaggtgctcctggcaaccgtgggttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggtcttgctggt
cccaagggagccaatggtgaccctggccgtcctggagagcctggcctccctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
gctggtgaagatggtcgccctggacctccaggtcctcaggggactcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa
ggactgcctggtgctcccggtctgagaggtctccctggcaaagacggtgagacaggagct
gcaggcccccctggacctgctggacctgccggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggcccgcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggcgttcccggtgaagctggagctcccggcctcgtgggtcccaggggtgaa
cgaggtttcccaggggaacgtggctctccagggtcccagggcctccaggggccccgcggc
ctgcctggcactcctggcactgatggtcccaaaggtgcagctggtccaggtggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagagaggagcagctggcatc
gctgggcccaagggagacaggggtgatgttggtgagaaaggccccgagggagcccccggg
aaggacggtggacggggtctgactggccccattggcccccctggcccggctggtgccaac
ggtgagaagggagaagttggacctcctggtccttcaggaactgctggtgctcgcggcgcc
ccgggtgaacgtggagagactggaccccccgggcccgctggatttgctggtcctcctggt
gctgacggccagcccggtgccaaaggcgagcaaggagaggccggccagaaaggtgacgcc
ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggcgctcaaggccccccgggagccaccggattccccgga
gctgcaggccgcgtcggacccccaggttccaatggcaaccctggaccccccggcccccct
ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagcggcccccctggccga
gctggtgaccctggcctccaaggtccttccggaccccctggcgagaagggagagcctgga
gatgacggtccttctggtcccgacggtcctccaggtccccagggtctggctggtcagagg
ggcatcgtcggtctgccggggcagcgtggtgagcgaggattccccggcctgcccggccca
tcgggtgagcctggcaagcagggagctcctggagcatctggagaccgaggtccccctggc
cccgtgggtcctcctggcctgactggtcctgcgggtgaacctggacgcgagggaagccct
ggtgctgacggcccccctggcagagacggtgcagctggggtcaagggtgatcgtggtgag
accggtcccttgggtgcccccggagccccagggccccctggctctcctggccccgccggc
ccagtcggcaagcagggagaccgaggagaagctggtgcacaaggccccatgggaccctca
ggaccagctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa
acgggagaggctggcgagaggggactgaaaggacaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtcccgctggagaccaagggacttctggtcctgccggcccttct
ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggcgctaatggaatc
cccggccccattggacctcctggaccccgtggacgttcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggccctccaggtccccctggccccggcattgacatg
tccgcctttgctggcctaggccagagagagaagggccccgaccccctgcagtacatgcgg
gccgatgaggcagccggcaacctgagacagcatgacgccgaggtggatgccacactcaag
tccctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaaccccgcc
cgcacctgccgggacctgaaactctgccaccccgagtggaagagcggagattactggatc
gacccgaaccagggctgcaccctggacgccatgaaggttttctgcaacatggacactggc
gagacctgcgtctaccccagcccagccagcgttcccaagaagaactggtggaacagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctgccaacaccgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagccgctggcaacctcaagaaggccctgctcatccagggctccaacgacgtggag
atccgggccgagggcaacagcaggttcacgtatacggttctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgattgagtaccggtcgcagaagacctcacgtctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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