Lentibacter algarum: LentiSH36_00118
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Entry
LentiSH36_00118 CDS
T09071
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lalg
Lentibacter algarum
Brite
KEGG Orthology (KO) [BR:
lalg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalg03019
]
LentiSH36_00118 (hrpB)
Enzymes [BR:
lalg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LentiSH36_00118 (hrpB)
Messenger RNA biogenesis [BR:
lalg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LentiSH36_00118 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
CON_HrpB
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WIF30609
LinkDB
All DBs
Position
complement(128154..130628)
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AA seq
824 aa
AA seq
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MPSLPLDCPARAMLQRDMQNLPIHDALPALLAAFQSGTRAVLQAPPGAGKTTVVPLALLS
SGLVTGRILMLEPRRLAARSAAEYMASTLGEEIGATVGYRIRGESKTSKQTRVEVVTEGI
LTRMLQSDPELSGVGMVIFDEFHERSLNADLGLALCLEISEALRDDLRLLVMSATLDAAP
VAALMGGAPVVTSEGRSFPVETRWLEKPLPKGARIAEAMVEQILSILPETNGGLLAFLPG
EGEIRRAAAQLDARVPEGVSVHMLFGALPFKDQQAAIRPAKSGRKIVLATSIAETSLTIE
DVRVVLDAGLARRARYDAGSGLSRLVTEKVSRAEATQRQGRAGRVATGTCYRLWTRGEEG
ALPAFAPAEIEVADLAPFALELALWGSADLPLLTAPPEGTLAEAQSLLLALGAHDTEHRI
TAHGRTLAALPVHPRLGHMLALAGKSAAPVAALLSERDILKGAPADLALRLKALENPRAV
PHQVNHAALAQVRTEAKRLARTAPDVPTGYSPAQMAALAYPDRIALRRTGDAPRFLTSGG
KGTYLADDDPLAAARLLVVTDTDGHPREARIRAALQISEAELREVFAPDITWQNSCHWSR
RERRVMALEEERFGQLALQSRIWKDAPQEDTARAMCGGIRELGLKPSPAAERLRARVALL
TQAGHEMPDMSDTALLETLEVWLTPYITGVKTDAQWKSFDIHSALQAQLTYEQTQLLAQH
APAHFTTPLGRQIPIDYAGDDPEISLRIQEMFGQRTHPQVAGKPLRVTLLSPAQRPVQTT
MDIPAFWDTSYSDVRKDMRGRYPRHPWPEDPREADPTLRTKRRS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgccctctttgccgcttgattgtccagcccgcgccatgctccaaagggacatgcaaaac
ttgccgatccatgatgcgctccccgcgctcctcgccgcattccaaagcggcacgcgcgcg
gtgcttcaagcccctcccggcgcgggtaaaacaacagtcgtaccccttgcattgctgagt
tcaggtctcgtcactggccgcatcctcatgcttgagcctcgccgcctcgcagcgcgctcc
gcagccgaatatatggcctccacacttggggaggagatcggcgcaacagtcggctaccgc
atccgcggcgaaagcaagacaagcaagcaaacgcgtgtggaagttgtcaccgaaggcatc
ctcacccgcatgttgcaatctgatcccgagctttcaggcgtgggcatggtgatctttgac
gagttccacgaacgctcgctcaacgccgatctcggcctcgccctctgcctagaaatcagc
gaagccctccgcgatgatctcaggctgctggtgatgtctgccacgctagatgccgccccc
gtcgccgcgctcatgggcggcgcacccgtggtcacatccgaaggccgcagctttcctgtt
gaaacccgttggcttgaaaagccgcttcccaagggcgcacggattgccgaagccatggta
gagcaaatcctcagcatactgcccgagacaaacggcggcctccttgcgttcctcccgggc
gaaggagaaattcgccgcgcggccgcccagcttgatgcacgcgtccccgagggcgtctcg
gttcacatgcttttcggcgcactccccttcaaagatcagcaagccgccatccgccccgca
aaatctggacgcaaaatcgtgttggcaacctccatcgccgaaacctcgctgaccatcgaa
gatgtccgcgtggtgctcgacgcaggcctcgcccgccgcgcgcgctatgatgcaggctct
ggcctttcccgcctcgttacagaaaaggtcagccgtgcagaagccacccagcgccaagga
cgcgcaggccgtgtggcgacaggcacctgctatcgcctctggacacggggcgaagaaggc
gcgctgcccgcctttgcgcctgctgaaattgaggtggctgatcttgcccctttcgccctt
gaactcgccctttggggcagcgctgatttgcccctgctcacagctccccccgaaggcaca
ctcgcagaggcgcaaagcctcctgttggcccttggtgcccatgatacagagcatcgcatt
actgctcatggccgcacgctcgcggccctgcccgtacacccgcgccttggccacatgctt
gccctcgcaggtaaatctgccgcgcctgtcgcagcacttctgagcgaacgtgatattctt
aagggcgcacccgccgatctcgctttgcgcctcaaagcgctggaaaacccccgtgctgtg
ccccatcaggtcaatcacgccgcgcttgcccaagtccgcaccgaagccaagcgcctcgcc
cgcacagcgcccgatgtacccacaggctattctcccgctcaaatggctgcgctcgcctat
cctgatcgcatcgcgctgcgccgcacaggcgatgcgccacgctttctcacatcgggcggc
aaaggcacatatcttgccgatgacgatccactcgccgccgcccgcctgcttgtcgtgaca
gacaccgacggtcacccgcgcgaggcccgcattcgcgctgcgctccagatatcagaggcc
gagctgcgtgaggtcttcgctcccgacataacatggcaaaactcttgtcattggtcccgc
cgcgagcgccgcgtgatggcgctggaggaagagcgctttggccaactcgcactgcaatcg
cgaatatggaaagacgcgccgcaagaagacacagcccgcgccatgtgcggcggcatccgc
gagctcggcctcaagccctctcccgccgccgagcgcctacgcgcgcgcgttgctcttctg
acgcaagcaggccacgagatgcccgatatgtccgacacagcgctccttgagacattggag
gtttggcttacaccatatattacaggcgtaaaaacagatgcgcagtggaagtcctttgac
atccattcagcgctccaagcgcagctgacctacgaacaaacccagctcttggctcagcac
gcccccgctcatttcaccacgcccttgggccgtcagatcccgattgattacgcgggcgat
gatcccgaaatctcgctgcgcattcaggaaatgtttggccagcgcacccacccccaagtc
gcgggcaagcctctacgcgtcacgctcctgtcgcccgcccagcgccccgtgcaaaccaca
atggatatcccagcattctgggatacctcctattctgatgtgcgcaaagacatgcgtggc
cgctatccccgccacccgtggcccgaagacccccgcgaagcagaccctaccctgcgtaca
aaacgccgctcatga
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