Lentibacter algarum: LentiSH36_02784
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Entry
LentiSH36_02784 CDS
T09071
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
lalg
Lentibacter algarum
Pathway
lalg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LentiSH36_02784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lalg03021
]
LentiSH36_02784
03019 Messenger RNA biogenesis [BR:
lalg03019
]
LentiSH36_02784
Transcription machinery [BR:
lalg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LentiSH36_02784
Messenger RNA biogenesis [BR:
lalg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LentiSH36_02784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
NACHT
OB_RNB
AAA_25
ATPase_2
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WIF33204
LinkDB
All DBs
Position
2751363..2752643
Genome browser
AA seq
426 aa
AA seq
DB search
MTDETQEQLHLAELKAMHPKELVTMAEELEIENATTMRKGEIMFSILKERAEEGWMIGGE
GVLEVLQDGFGFLRAPEANYLPGPDDIYVSPEILRKFSLRTGDTIEGHLKQPEDNERYFA
LTHVTKINFEEPEKARHKIAFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVAPIGKGQ
RSLIVAPPRTGKTVLLQNIAHSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTF
DEPATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSSGKVLTGGVDAN
ALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADK
RVFPAMDILKSGTRKEELLVDSKDLQKTFVLRRILNPMGTTDAIEFLLGKLKQTKTNGEF
FDSMNT
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgagacccaagagcagctccaccttgccgaacttaaggcaatgcaccctaaa
gagctggtcacaatggctgaagagctcgaaatcgaaaacgccacaacgatgcgcaagggc
gagattatgttctcgatccttaaagagcgcgccgaagagggctggatgatcggcggtgaa
ggcgtcctagaagtgctccaagacggtttcggcttcttgcgcgcacctgaggcaaactac
ctgccagggcctgatgatatttatgtatcgccagaaattctgcgtaagttttctctgcgt
acgggtgacacaatagaaggtcatttgaagcagcccgaagacaacgagcgctatttcgcc
cttactcacgtcaccaagattaactttgaagagcctgagaaggcccgtcacaagattgcc
tttgacaacctgacgccgctctatcctgatgagcgcctgaaaatggaaatcgaagacccg
acaatcaaggatcggtccgcgcgcatcattgatctcgtcgctcccatcgggaaaggccag
cgatcgcttattgttgctccgcctcgcactggtaaaactgttctgctccagaatatcgcc
cacagcatcgaaaagaaccaccctgagtgctatctcatcgttctcttgatagatgagcgc
ccagaagaagtgacggacatgcagcgatccgtaaaaggcgaggttgtctcctcgacattc
gatgaaccagcgacccgtcacgtggccgtctccgaaatggtcatcgaaaaggctaagcgc
ctcgttgagcacaaacgagacgttgtcattctactcgattcaatcacgcgccttggccgt
gccttcaacacaactgttccttcgtcaggtaaggttctgacaggcggtgtcgatgccaac
gccctccaacgccccaagcgcttttttggcgcagcgcgtaacatcgaagaaggtggctcg
ctgacaatcatcgcaaccgcccttatcgacacaggctcgcgcatggatgaggtcatcttt
gaggagtttaaaggcacgggtaactccgagattgtgcttgatcgcaaagttgcagacaag
cgcgtgttccctgcgatggatattctcaagtcaggcacccggaaagaagaactcttggtc
gactcaaaagaccttcagaagaccttcgttctgcgccgtatcctcaatccgatgggcaca
acagacgctatcgagttcttgctgggcaagctcaagcaaaccaagacaaatggcgaattc
ttcgactccatgaacacgtaa
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