Companilactobacillus alimentarius: LA20249_02610
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Entry
LA20249_02610 CDS
T05458
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lali
Companilactobacillus alimentarius
Pathway
lali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA20249_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lali03019
]
LA20249_02610
03400 DNA repair and recombination proteins [BR:
lali03400
]
LA20249_02610
Enzymes [BR:
lali01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LA20249_02610
Messenger RNA biogenesis [BR:
lali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA20249_02610
DNA repair and recombination proteins [BR:
lali03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LA20249_02610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_45
Motif
Other DBs
NCBI-ProteinID:
AUI71156
UniProt:
A0A2K9HH95
LinkDB
All DBs
Position
522868..524673
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AA seq
601 aa
AA seq
DB search
MNLEAILKERFGYDTFRAGQRELIEKVLDGQKAMGIMPTGGGKSICYQLPATILPGITLV
VSPLISLMKDQVDSLNEVGIPATFLNSTVEWLDREERMRYIETGAVKLLFVAPEKIVDDE
FYSWLSQLDISLIAIDEAHVLSSWGHDFRNSYLKMIKPLKQLSGEPAWLALTATATEQVQ
DDLADILEIPNENIVKTGFARTNLTLKIERGVDKVKFVSNYVLSHADESGIIYAGRREDV
DNIYTFLQKKGIRVGRYHAGLSDQERHQQQEDFLYDRIDVIVATNAFGMGINKTNVRYVL
HFTIPGTIENYYQEVGRAGRDGLPAEAVLLYAPVDLQLHRFFIGKSLGDDQYKMSLTNKL
FKMSQYAETESCLMKFILDYFGEEDTQPCGKCSNCLDNREVVDITADAQKALSCIVRMDQ
RYGKKMVTRVLVGKDDVANDWHHFEKLSTFGIFKDNTLKQTSRLLDFLSANGFLKSSGGK
YQTLLLSDKGLKVLKGDLNVVRRREQVNTEIKTKTMVADGSFDVDLFEDLRKLRLELARK
QGIAPFMIFSDKTLKNMCEMMPTSTEEFLSVSGVGKVKLEQYGETFLTAITEFQKTKQRI
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttagaagctattttaaaagagagatttggttacgacacatttagagctggtcaa
agagaattaattgaaaaggtcttggatggtcaaaaagctatgggtatcatgcctactggt
ggtggtaaatcaatttgctatcagttgccggctactattttgcctgggataactttggtt
gtttcgccattgatttctcttatgaaggatcaggttgacagtttaaatgaggttggtata
ccggccaccttcttaaatagtacagtagaatggctcgaccgtgaggagcggatgcgctat
attgaaactggcgccgtgaagctcctttttgttgctcctgaaaaaattgtagatgatgaa
ttttacagttggctatcacagttagatatttcattaattgcaattgatgaggctcatgta
ctgtcttcatgggggcatgattttcgaaatagttacttgaagatgatcaagccactgaaa
caattgtctggagagcctgcttggttggcactgactgctactgcaaccgaacaagtacaa
gatgacttagctgacattttagagattccaaatgaaaatattgttaaaacaggatttgct
agaactaatttaaccttaaaaattgagcgtggtgttgataaagtaaaatttgtttccaat
tatgttttgagtcacgcagatgaatcagggattatttatgcgggacgtcgtgaagatgtt
gataatatttatacttttctccagaaaaaaggtatcagggtagggcgttatcatgctgga
ttgagtgatcaagagcggcatcaacaacaagaagatttcttgtatgaccgaatagatgtt
attgtggcaaccaatgcttttggtatgggtatcaacaagactaacgttcgttatgtgttg
cattttactatacctggtacaattgagaattattatcaagaagtaggtcgtgcgggacgt
gatgggctaccagcagaggccgtcttattatatgctccagtcgacttgcaactgcatcga
ttctttattggaaaatctttgggtgatgatcaatataagatgagtctgaccaacaaactc
tttaagatgagtcagtatgctgaaaccgaatcctgcttgatgaagttcattttggactac
tttggcgaagaagatactcagccttgtggtaaatgctctaattgcttggacaatcgggaa
gtagtagacatcacagctgacgctcagaaggctttgagctgtattgtaaggatggatcaa
agatatggtaaaaagatggttacgcgcgtcctagttgggaaagatgatgtagcaaatgat
tggcaccattttgaaaagctgtcgacgtttggaatcttcaaggataatactttgaagcaa
actagtcgattgcttgattttttaagtgctaatggctttcttaagagtagtggaggaaag
tatcagacgctcttgttgtctgataaggggttgaaagtacttaaaggcgatttgaatgtt
gttagaagaagagagcaagtaaatactgagattaagactaaaacgatggtggccgatggt
agttttgatgttgacttgtttgaagatttacgtaaattaagattagaattagcccggaag
caaggaatagcaccattcatgattttttctgataagacattgaaaaacatgtgtgagatg
atgccaactagtactgaagaatttctgtcagttagtggtgtcggtaaagttaaacttgaa
cagtacggagaaactttcttgacagcaattacagaatttcaaaaaactaaacagagaata
tcttag
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