Companilactobacillus alimentarius: LA20249_06240
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Entry
LA20249_06240 CDS
T05458
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lali
Companilactobacillus alimentarius
Pathway
lali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA20249_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lali03019
]
LA20249_06240
03009 Ribosome biogenesis [BR:
lali03009
]
LA20249_06240
Enzymes [BR:
lali01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LA20249_06240
Messenger RNA biogenesis [BR:
lali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LA20249_06240
Ribosome biogenesis [BR:
lali03009
]
Prokaryotic type
rRNA helicases
LA20249_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
CobA_CobO_BtuR
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
AUI71798
UniProt:
A0A2K9HHE3
LinkDB
All DBs
Position
complement(1301157..1302692)
Genome browser
AA seq
511 aa
AA seq
DB search
MKFKELDLDPRLLSAVNEAGFEETTPIQAQTIPLVMTGDDVIGQAQTGTGKTAAFGLPIL
NAVDTQSSNIQALIISPTRELAIQTQEELYRLGSDKKVKVQCVYGGSDIRRQIRALKNHP
QIVVGTPGRMLDHINRHTLKLGNVKTVVLDEADEMLDMGFVEDIENILSNVPHEHQTLLF
SATMPKPIMKIADKFMTDPKVVKIKSKELTADKIEQYFVKAREFEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKSGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMSYLRTIENLTKK
RMEPLAPPTDKEVLKGQLESVKEDIKDTLEHDKHLDRFDSAVEELLANYSAEDIARVFLS
ETIKDAESVPIKIAPERPLPSRKVSHSRSGHGRRGKYNHHRGGGNGENNHRRRRNDRRDN
HNDKHGDSKHREHDNKRNGRSKKSFKIRTNL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaattagatttagatcccagattactgagcgccgttaacgaagcaggc
tttgaggaaacaacacctatccaagcccaaacaattccactagttatgactggtgatgac
gttattggacaagctcaaactggtacaggaaagacggcagcctttggtttaccaatttta
aatgccgttgatactcaatcaagtaacattcaagcattgattatctctccaactagagaa
ttagctattcaaacacaagaagaactttaccgcttaggtagtgacaagaaggttaaggtt
caatgtgtctatggtggatcagatattagaagacagatccgtgccttgaagaatcaccct
cagatcgtggttggtactcccggaagaatgcttgaccacatcaaccgtcacaccttaaaa
cttggcaatgtcaagactgttgtacttgacgaagctgatgaaatgctagatatgggattc
gttgaagatattgaaaatatcctttcaaacgttcctcatgaacatcaaacattgcttttc
tcagctacaatgccaaaacctatcatgaagattgctgataaattcatgactgatcctaag
gttgtcaaaattaaatcaaaggaattaactgctgacaagatcgaacaatattttgttaaa
gctagagaatttgaaaagtttgacttgatgactcgtttattcgatgttcaagctccagaa
ctagcattgattttcggacggacaaagcgtcgtgttgatgaattgacacgtggtttgcaa
gctcgtggttacaatgctgaaggtattcatggtgacctgtcacaagataaacgtactagc
gttttacgtaagttcaagtcaggtaaactagactttttagttgcaactgatgttgctgct
cgtggtttggatatttctggtgtatcacatgtttataactatgatattcctcaagatcca
gacagttatgttcaccgtattggacgtacaggtcgtgccggacactctggtgtttctgta
acttttgttacaccaaacgaaatgagttatctacgtacaattgaaaacttaactaagaaa
cgtatggaaccacttgctccaccaactgataaagaggttcttaaaggacaattggaatca
gttaaggaagatatcaaggatactttggaacatgacaagcacttggatcgtttcgattca
gctgttgaagaattgttagccaattattctgctgaagatattgctcgcgtgttcttaagc
gagactatcaaggatgccgagagtgttcctatcaagattgctcctgaaagaccacttcca
tcacgtaaagttagtcatagtagatcaggacatggtcgtcgtggtaagtacaaccatcat
cgtggtggcggaaatggtgaaaataatcaccgtagaagacgcaatgatcgtcgtgataat
cacaatgataaacatggtgatagtaaacatcgcgaacatgataacaaacgtaatggtcgt
agcaagaagtcattcaagatcagaacaaatctttaa
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