Companilactobacillus allii: BTM29_00890
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Entry
BTM29_00890 CDS
T05413
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BTM29_00890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lalw03021
]
BTM29_00890
03400 DNA repair and recombination proteins [BR:
lalw03400
]
BTM29_00890
Enzymes [BR:
lalw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BTM29_00890
Transcription machinery [BR:
lalw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BTM29_00890
DNA repair and recombination proteins [BR:
lalw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BTM29_00890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
APX71196
UniProt:
A0A1P8Q051
LinkDB
All DBs
Position
complement(156618..160286)
Genome browser
AA seq
1222 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMAHIELAAPVTHIWYFKGIPSRMGLVLDM
TPRNLEEVIYFASYVVIDPGDTDLEKKQLLTESEYRKKREEFGNKFVAKMGAEGIRELLA
QVDMPGEVKELREALKTAQGQKRTRAIRRLDIISAFQKSGNKPEWMVLEAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPNIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPTLKFYQCGLPRE
MALELFKPFVMHELVKREIASNVKNARRKIDRQDDDIWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTIETRHMTGEGKIFKDANEVQTALLNGDVHYHTRIGLA
VSSMPTKPFTDEQRKRIIMTSVGKVIFNEILPEDFPYLNEPTDDNLENGVPDKYFLSKGG
DINARLDEMDLVDPIKSGYMSDIIAKVFKVYRVQRTSSLLDDMKELGYTICTISGLTVGV
TDVPNLTEKPEIIEKAHKQVASISKQFRRGLITDEERHDRVISVWNDTKDEIQQLLIDSF
DPTNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVISNFREGLSVLEMFMST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSSIMEGTDMIEPLY
DRLVGRYTQKTVKDPNSGEVIAKRGVLMDENLAQKIVDAGVKEVTIRSAFTCDTKHGVCK
KCYGRNLATGEEVEIGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGDDITQGLPRVQEI
VEARNPKGLAIISEVDGTITAIDENPAEHTKEITVEGDIDSRSYSVPYTSSVAVAEGDYV
TRGGKLTQGSIDPKELVKVTNVQTTENYLLAEIQKVYRMQGVDISDKHFEVMIRQMLRKI
RILDPGDTDVLPGQLMDISQFTDHNRETLFNGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLLGLKENVIIGKLIPAGTGMAKYSHMEPKKTGPMADNSLNG
AYTISDIEAQMKANDAAKEEKH
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataaatttgaaagtatgcaaattggtttagcatctcctgacaagatt
cgtagctggtcttatggagaggttaagaaacctgaaacaatcaactatcgtactttgaaa
ccagaaaaagatggcctattcgacgaaagaattttcggaccaactaaagactgggaatgt
gcctgtggtaagtacaaacgtatccgttataagggtattgtttgtgaccgttgtggtgtt
gaagttactcgttcaaaagttcgtcgtgaacgtatggctcatatcgaattagctgcacca
gttacacatatctggtatttcaagggtattccatcacgtatgggacttgtattggacatg
actccaagaaaccttgaagaagtaatttactttgcatcatatgttgttattgatccaggt
gatacagacctagaaaagaaacaactactaacagaatctgaatatcgtaagaaacgtgaa
gaatttggtaataaattcgtcgctaagatgggtgcagaaggtatcagagaacttcttgct
caagttgatatgccaggtgaagttaaagaattacgtgaagctttgaagactgctcaaggt
caaaaacgtacacgtgcaattagacgtttggatattattagtgctttccaaaagtcaggt
aataaaccagaatggatggttctggaagcaattcctgtcatcccacctgatttacgacca
atggttcaactagaaggtggccgttttgcaacttctgatttgaatgacttgtatcgtcgt
gtaatcaaccgtaataatcgtttgaagagattgttagatttacatgctcctaatatcatt
gttcaaaacgaaaagagaatgcttcaagaagccgttgatgcgttagttgataatggtcgt
cgtggccgtcctgttacaggaccaggtaaccgtccattgaagtcactttcacatatgctt
aaaggtaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgattattcagga
cgttcagttatcgatgttggtcctacattgaagttttaccaatgtggactacctcgtgaa
atggctcttgaattattcaagcctttcgttatgcatgaattagttaagcgtgagattgct
tctaacgttaaaaatgctagaagaaaaatcgatcgtcaagatgatgacatctgggatgta
ctagaagatgttattaaggaacgtccagtattacttaaccgtgcccctacacttcacaga
cttggtattcaagcctttgaacctgtattggttgatggtaagtcaatccgtcttcaccca
ttagcttgtgaagcttacaatgccgattttgatggtgatcagatggctatccacgttcct
ttatcagacgaagctcaagccgaagcacgtatgcttatgcttgctgctcaccatattctt
gctcctaaagatggtaagcctattgttacaccatcacaggatgttgttttgggtaattac
tacttaacaattgaaacaagacatatgactggtgaaggtaagatctttaaggatgctaac
gaagttcaaacagcattgcttaatggtgatgttcactaccatacaagaattggtttggcg
gtttcatctatgccaactaagccatttactgatgaacaacgtaagagaatcattatgact
agtgttggtaaggttatctttaacgaaattcttcctgaagatttcccttacttgaacgaa
ccaactgatgacaacttggaaaatggtgttcctgataaatacttcttgagtaaaggtgga
gacatcaatgctagacttgatgagatggatcttgtagacccaatcaagagtggttatatg
tcagatatcattgctaaagtgtttaaggtatatcgagttcaacgtacatcatcacttctt
gatgatatgaaggaattaggatacacaatttgtacaatttctggattaacagttggtgtt
acagatgttcctaatttaactgagaaacctgagatcattgaaaaggcccacaaacaagtt
gcttcaatttctaagcaattccgtcgtggtctaatcactgacgaagaacgacatgatcgt
gttattagtgtatggaacgatacaaaagatgaaatccaacaattgttgattgattcattt
gatccaaccaaccctatctcaatgatgtctgattctggtgcccgtggtaatatctcaaac
tttactcaactagcaggtatgcgtggacttatggctgcccctaatggtggtatgatggaa
attcctgttatttctaacttccgtgaaggactttcagttttggaaatgttcatgtcaacc
cacggtgcccgtaaaggtatgactgatactgctttgaagacagccaactctggttactta
actcgtcgtctagttgatgttgctcaagatgttatcgttcgtgaagaagattgtggtact
gaccgtggacttcttgtaagttcaatcatggaaggtacagatatgatcgaaccattgtac
gatagacttgttggacgttacacacaaaagacagttaaagatcctaatagtggtgaagtt
attgctaagcgtggagttcttatggacgaaaacttggcacaaaagattgttgatgctggt
gttaaagaagttacaattcgttcagcatttacatgtgatacaaaacacggtgtatgtaag
aagtgttatggtagaaaccttgctactggtgaagaagttgaaattggtgaggcagttggt
actgttgctgctcaatcaatcggtgaaccaggtacacaactaactatgcgtaacttccat
accggtggtgttgctggtggtgacgatattacacaaggacttcctcgtgttcaagaaatc
gttgaagctagaaaccctaaaggtcttgcaattatttcagaggttgatggtactattaca
gcaattgacgaaaaccctgcagaacatactaaggaaattacagtcgagggtgatattgat
tctagatcttatagtgttccttatacatcaagtgtcgcagttgccgaaggtgactatgta
acacgtggtggtaagttaacacaaggttcaatcgatcctaaggaactagttaaagttaca
aatgttcaaacaacagaaaattatctacttgcagaaattcaaaaagtttatcgtatgcaa
ggtgttgatatttctgataagcatttcgaggttatgatcagacaaatgttacgtaagatc
agaattcttgatccaggtgatactgatgtattaccaggtcaattaatggatatttctcaa
tttacagatcacaaccgtgagacattgtttaacggtggtattcctgcaacgggacgtcca
gtattgcttggtattactaaggcatctcttgaaactaacagtttcttgtcagctgcttcc
ttccaggaaacaacaagagttcttactgatgcttcaattcgtggtaagaatgatccactt
cttggacttaaagagaatgttattattggtaaacttatccctgccggtactggtatggct
aagtacagccacatggagcctaagaaaactggccctatggcagataactctctaaatggt
gcttatacaatttcagatatcgaagctcaaatgaaagctaacgatgctgctaaagaagaa
aaacactag
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