Companilactobacillus allii: BTM29_00980
Help
Entry
BTM29_00980 CDS
T05413
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BTM29_00980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lalw03400
]
BTM29_00980
Enzymes [BR:
lalw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BTM29_00980
DNA repair and recombination proteins [BR:
lalw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BTM29_00980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
IstB_IS21
UB2H
AAA_30
Zeta_toxin
AAA_22
LRR_8
Motif
Other DBs
NCBI-ProteinID:
APX71209
UniProt:
A0A1P8Q080
LinkDB
All DBs
Position
complement(178075..181614)
Genome browser
AA seq
1179 aa
AA seq
DB search
MNLIDFIAGKLNFGGFIDQIKPKTKNMLTGLTGSTISLFALQTLKLKNNKILVVENTNFH
ANKLYDDLNLLDNEHVHIFPVEEAISTEIATSSPDELSQRLDAMSFLVSDEPGIIVTSVA
GVEYALPSRELFEASQMKIVKDAEYDLENLNSIFVQMGYQKDKLVAKPGDFAIRGDIVDI
YPLNVDNPLRIDFFGNNVEGIKFFDTETQRSMEELDEINILPANDRVITEENVKSGLKKL
QKSYDKQLASADKDVKNNLELTFSQVIEELSEGIRPDNLGSIIDYLVDDPSSLMDYLKSD
DVLIFDEYSRLIEQSNDNNADNQAWLTSQLEFGKALPEQVIRQSFIELMKKNEVSQVYIS
AFQQGMGHIKLDQLHNVSVRSMQQFFSQMPLLKSEVERFQKQEYTVLLLISNKKRMDAIN
NTLVDFGIKATLTTSDKVLDSQTQIMNANFGSGFEIPDEKVAVITEKELFNKQPKRRRHQ
TLANAERLKSYNELKPGDYVVHVNHGIGKFIGMQTMEVDGKHQDYITIEYRDDGRLFIPV
SQLDMVQKYVSAEGKSPRVNKLGGNEWQKTKRKVQSSIEDIADDLIDLYAKREAEKGYPF
PKDDAMQHDFDNAFPYPETPDQLRSIDEIKHDMEKAHPMDRLLVGDVGFGKTEVALRAAF
KAIEAGKQVVFLAPTTLLAEQHYQTMKDRFEGFPVNIAVLSRFQTRKRSKEIVQELSEGK
IDIVVGTHRLLSKDVKFSDIGLLIIDEEQRFGVKHKEKIKELKANVDVLTLTATPIPRTL
NMSMLGVRDLSLIETAPSNRYPVQTYVMEQNYDVIAGAIRREMERGGQIFYLHNRVDDMD
QVANQLQALVPDARIATAHGRMTETQMEGVISDYLAGEYDVLVTTTIIETGVDMPNTNTL
IVENADRYGLSQLYQIRGRVGRSNRVAYAYLMYKPNKVLTEVSEQRLEAIKNFTELGSGF
KIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYTQMLNDAVAKKRGHTKAEKTNSEVNLEI
DAYIPSSYISDERQKVELYKRIRQIDSDENYQEVRSELLDRFGDYPQEVTNLLDVSLLKT
SLDESLVKNVIMKSGIIVIKFSDKANDYLTGDIVFEFLSNTTMKATVHNKKNEFSISLDS
GSIEKGEWFEQLQTFAIEMAKEFDKLKKAKNNTNEKRSI
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaacttaatagattttatagcgggcaaattgaattttgggggatttatagaccagatt
aaaccgaagacaaagaatatgttaacgggattaactgggtcgacgatttccctatttgca
ttgcaaacgttaaaactaaaaaataataaaatattggtggttgagaatactaattttcat
gccaataaattatatgatgatctgaatttactggacaatgaacatgtacatattttcccc
gttgaggaagcaatttcaacagaaatcgctactagttcaccagatgaactgagccaaaga
ctagatgccatgagctttttagtcagtgatgaaccagggattattgtgacttctgttgct
ggtgtcgaatatgcgctaccttcaagagaattatttgaagcgtctcagatgaaaatagtt
aaagatgcagaatatgatcttgagaatttaaatagtatttttgtacaaatgggatatcaa
aaggataagttagtggccaaaccaggagactttgctattcgtggtgatattgtcgatatt
tatccgttgaatgttgataatccattaagaattgatttctttggtaataatgtcgaggga
attaagttctttgatactgaaacacaacgtagtatggaagaattggatgagatcaatatt
ttacctgcaaatgatcgagttataacagaagaaaatgttaaatcaggtcttaaaaaacta
caaaaaagttatgataaacaacttgcttcagccgataaggatgttaagaataatcttgaa
ttaactttttctcaggtcatagaggaattatctgaaggtattagaccggacaatcttggg
agtattatcgattatttggttgatgatccaagtagtttaatggattatttgaagtcagat
gacgtattgatctttgacgaatacagtcgattgattgaacaatcaaatgataataatgct
gacaatcaagcctggttaacaagtcagttggaatttggtaaggctctacctgaacaagtt
atccgacagagctttattgaattaatgaaaaaaaacgaagtatcacaagtatatatatcg
gcattccaacaaggaatgggacatatcaaactggatcaattgcacaatgtttctgtcaga
agcatgcaacaattctttagtcaaatgcctctattaaagtctgaagttgagcgttttcaa
aaacaagaatatacagttcttctattgataagtaacaaaaaacgcatggatgctattaat
aatactttggttgactttggtatcaaagctacattgacaacgtctgataaggttcttgat
agtcaaacacaaattatgaatgctaattttgggtcaggatttgaaatacctgatgaaaaa
gttgctgtcatcactgaaaaagaactgttcaataagcaacctaaacgtagaagacatcaa
actttagctaatgctgaacgtttaaagagttataacgagctgaaaccaggggattatgta
gtacatgtcaatcatggtattggtaagttcattggtatgcagacgatggaggtcgatggt
aaacatcaagactatattacgatcgaatatcgtgatgatggtcgtttgtttataccagta
tctcaactagatatggtccaaaagtatgtttctgctgaaggcaaatcaccacgggtcaat
aagcttggtggtaatgaatggcaaaagactaagcgtaaagtccagtctagtattgaagat
attgccgatgatttaatagatctttatgcaaaaagagaagcagaaaaaggctatccgttc
cctaaagatgatgcaatgcaacatgactttgataatgccttcccatatccagaaacacct
gatcaattgcgctcaattgatgaaattaaacatgatatggaaaaagctcatccgatggat
cgacttttagtaggggatgttggatttggtaagactgaagtggcacttcgtgcggcgttt
aaagccattgaagccggtaaacaagtcgtatttttggctccaaccacattactagcagaa
caacattaccagacaatgaaagatcgatttgaaggatttccagtaaatattgctgtatta
tcaagatttcaaactcgtaaacgtagtaaagaaatcgttcaagaactttctgaaggcaag
atcgatatcgttgtgggaacacatcgacttttgtcaaaagatgttaagttcagtgatatt
ggattattgataattgatgaagagcaaagatttggtgttaaacacaaggagaagatcaag
gaattaaaggcgaatgtcgatgttttaacattgaccgctacaccaattcctagaacgttg
aacatgtcaatgttaggtgttcgtgatctgtcgctgatagaaacagccccaagtaatcgt
tatccagtccagacttatgttatggaacaaaactacgatgttatcgctggagcaatccgt
cgtgaaatggaacgtggtggtcagattttttaccttcacaaccgtgtggatgacatggat
caagttgctaatcaattacaggcactcgtaccagatgctaggattgctactgcacatggt
cgaatgacagagacacaaatggaaggtgttatttctgattatttagctggagaatatgat
gttttggtcacgacgacaattattgaaactggtgttgatatgcctaataccaacacattg
attgttgaaaatgctgacaggtatggattatctcagctgtatcagatacgtggtagagtt
ggtcgatcaaatcgagtcgcttatgcatatttaatgtataagcctaacaaagttttgaca
gaagttagtgaacaaagactagaagccattaagaactttactgaacttggttcaggattt
aaaattgccatgcgagatctatccattcgtggagcaggtaatctactcggtaagcaacaa
catgggttcattgattcagttggatttgatctctatacccagatgttgaatgatgctgtt
gctaagaagcgtggacacactaaggctgaaaagactaattcagaagttaatttggagata
gatgcatatattccatcaagttatataagtgatgaaagacaaaaggttgagttatataaa
cgtattcgacaaattgattcagacgagaattatcaagaagttagatcagaattgttggat
cgattcggagattatccacaagaagttactaatttattagatgtaagtcttttgaaaact
tcactggatgagtcactagttaaaaatgtcattatgaagagtggcataatcgtgataaaa
ttctctgacaaggccaatgattatttgactggagatatagtatttgagtttttgagtaat
acgactatgaaggcaactgttcataacaaaaagaacgaattcagtatttccttagattct
ggaagtattgaaaaaggtgaatggtttgaacaattgcagacttttgcgatagagatggca
aaagagtttgataaactaaagaaagcaaaaaataataccaatgaaaagagaagtatctaa
DBGET
integrated database retrieval system
