Companilactobacillus allii: BTM29_06585
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Entry
BTM29_06585 CDS
T05413
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lalw
Companilactobacillus allii
Pathway
lalw02020
Two-component system
lalw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BTM29_06585
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BTM29_06585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lalw03021
]
BTM29_06585
Transcription machinery [BR:
lalw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BTM29_06585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_12
MarR_2
HTH_23
HTH_3
HTH_IclR
Arg_repressor
Sigma70_r4
HTH_31
Motif
Other DBs
NCBI-ProteinID:
APX72247
UniProt:
A0A1P8Q339
LinkDB
All DBs
Position
1352784..1354067
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AA seq
427 aa
AA seq
DB search
MQLKQSHQLKQKQMQKLSLTQGMRQSIVMLQSDAIDLSEYLKDVSLENPLFDVHTSLDVP
FMQGTRDNQSYQLRDNSQSLFEYLLDQVQLTMRDTPLRDLVIYLVEQLDPNGYLPITDKE
IMDELNIDKVSLLDALTLLQQLDPPGVGAHDLRECLLLQAQADRESPEYAVDILKYYFDT
MVDHDWQTIQNNLQIDKTTLDENIDYIKELSATPGERYNGSDLQYVVPELQVKNNDGKLS
LAITRYGQPQLIFAQETYDLLSKTVDNDVKNYIKEKYDQYQTLEYNLERRIKTVSMIGKV
IVQTQYKFFTQETTTLEPLLLRDVAQRLQLSESTVSRAINGKYIQTDFGMIELKNLFSRR
SKVSDGVKSRSVDQVKDTIKKLIDEEDKPLSDQKISDLLKESGLEVARRTVAKYREQLHI
LTANKRK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaaacaaagccaccaacttaaacaaaaacaaatgcaaaaattatctttgact
caggggatgcgtcaatcaattgtcatgttacagtctgatgcaattgatcttagtgagtat
ttaaaagatgtcagtttagaaaatccattatttgatgtccatacaagtctcgatgttcca
ttcatgcaaggaacacgtgataatcaatcatatcaattaagagataatagccaatcacta
tttgaatatttattagatcaagttcaactaactatgagggatacaccattaagagatttg
gtgatttatttggttgaacaattagatccaaacggctacttgccaattaccgataaagaa
atcatggacgaattaaatattgataaggtgagtttgttggatgcattaacattgcttcaa
caactagatccgccgggtgttggagcacatgatctacgcgaatgtctacttctacaggca
caagcagatcgtgaatctccagaatatgctgtcgatattttgaagtattactttgacaca
atggtcgatcatgattggcagacgattcaaaataacctgcagatcgacaagaccacatta
gatgagaatattgattacatcaaagaattatcagctacacctggtgaacgctataacggt
agtgacttacaatacgttgttcctgaacttcaagttaagaataatgacggcaagttgagt
ctagcaatcactagatatggtcagccacaattgatctttgcacaagaaacatatgactta
ttatcaaagacagttgataatgatgtgaagaattatatcaaagagaaatatgaccagtac
caaacgctagaatataatttggaacgcagaatcaagacagtgtcgatgattggaaaggtt
attgtccagactcaatacaagttcttcacccaagagactacgacacttgagccattgttg
ttgagagatgttgcacaaaggttgcaattgagtgaatcgacagttagtcgtgctattaat
ggcaagtacattcagactgattttggtatgatcgaattgaagaacttattctcaagacgt
agcaaggtttctgatggtgtcaaaagtaggtcagttgaccaagttaaagatactattaaa
aagttgatcgacgaagaagataaaccgttgagtgaccagaagatatctgatttattaaag
gaatcaggattagaagttgcaagaagaacagttgctaagtatcgcgaacagttgcatata
cttacggcaaataaacgaaaatag
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