Companilactobacillus allii: BTM29_07235
Help
Entry
BTM29_07235 CDS
T05413
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTM29_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalw03019
]
BTM29_07235
03016 Transfer RNA biogenesis [BR:
lalw03016
]
BTM29_07235
Enzymes [BR:
lalw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BTM29_07235
Messenger RNA biogenesis [BR:
lalw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTM29_07235
Transfer RNA biogenesis [BR:
lalw03016
]
Prokaryotic type
tRNA degradation factors
BTM29_07235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1_RRP5
DUF421
S1CSD-TOTE-2
WHD_Rad26_CSB
Motif
Other DBs
NCBI-ProteinID:
APX72365
UniProt:
A0A1P8Q3E1
LinkDB
All DBs
Position
1494344..1496698
Genome browser
AA seq
784 aa
AA seq
DB search
MPDKENKLIADILEFFRNNPEHRYTSEQIEDSLRMHGASAFKRVVKAIAVLEGEGKITLT
NTDEFKMAQPDKVLEGTFKGNDKGFGFVKYDEVEPDAFISRDNTLHAVNGDTVEVKFIKP
SNPWIDKGPEGEIVKIVERSLSRIVGEFHPYSDAQVEKSGNYGYIKSHEKKLASYMVFIS
NKGLHPQMGDMVQVSIDEYPSDDHPQSMEGTALEVIGNKNDPGVDIMSIVIDNDINPEFP
KEVLEEAEEIPDHVLESDRVGRHDLTDNMVITIDGDDSKDFDDAVGVEKMADGKFHLEVH
IADVTHYVTEGSALDKEAYERGTSTYLVDRVIPMLPFRLSNGICSLNPGEDRLALTCDMV
IDQTGQVEKYDIYPSVIQSKYRMTYNNVNKILDGDVELCEEYKPLVPMLKDMSELHDILL
KMRHSRGAIDFEETEAKIIVDENGKPVDIQLRDRGISERMIESFMLAANETVAKNYNLKH
VPFLYRVHEKPDDEKVKRFFEFVAAMGVDVHGNLKDISPKMFQGVLAQVTGTPEEAVVTI
MLLRSMQQARYSDEPLGHFGLAAKYYTHFTSPIRRYPDLTVHRMIHSYAENGFTDDEKAK
WGGKLKEIGDHTSGRERKSIDAERAVDDLKKTEYMADQVGETFDAVVSSVTSFGMFIQLD
NTIEGLIHISNMKDDYYEFDEKSMSMHGRGTGKTFKVGQPIQVKLMRADVEHRQIDFERV
LTPEEAEQVKKREAEFAKRRASHSRSDHRHSNNGGRSNGNGHSNNHGHSNNNGSNKRRSK
YESR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgcctgataaagaaaataaattaattgcggatatacttgaatttttcagaaataatcca
gaacatagatatacttctgaacaaattgaagattcattgagaatgcatggagcttcagcg
tttaaacgtgttgttaaagctattgcagttcttgaaggtgaggggaaaatcactctcaca
aatacagatgagttcaaaatggctcaacctgataaggtccttgagggtacttttaagggt
aatgacaagggatttggatttgttaaatatgatgaagtagaaccagatgcctttatctct
agggataatacacttcatgctgttaacggagatacagtagaagttaaatttattaagcca
tctaatccatggattgataagggtccagaaggcgagattgttaaaatcgtcgagcgttca
ttgtctagaattgttggagaatttcatccatacagtgatgcacaagtggagaagtctggt
aattatggatatattaagagtcatgagaagaaattagcttcatacatggtttttatttct
aacaagggattacacccacaaatgggagatatggttcaagtatccattgatgaatatcca
agcgatgatcatccacaaagtatggaaggtactgctctagaagtaattggtaataagaat
gatcctggtgttgatattatgtcgatcgttattgataatgatattaatccagaattcccc
aaagaagttcttgaagaagcagaagagattcctgatcacgttttagagagtgatcgagtt
ggtcgtcatgatttaacagataatatggtcattactattgatggggatgattcaaaagac
tttgatgatgctgtcggtgttgaaaaaatggctgatggtaaattccaccttgaagtacat
atcgctgatgttactcactatgtaactgaaggatctgctttggataaagaagcttatgaa
cgtggaacaagtacatatttagttgaccgtgttattcctatgcttccattcagattgtca
aatggtatatgttcactgaaccctggtgaagatagattagctctaacttgtgatatggtt
attgaccaaactggacaagttgaaaagtatgacatttatccaagtgttatccaatctaaa
tatcgtatgacatataacaacgttaataagatattggatggcgatgttgagttatgtgag
gaatacaaaccattagttccaatgttaaaagacatgtcagaacttcatgatattttattg
aagatgagacatagtcgtggtgctattgactttgaagaaacagaagctaagatcattgtg
gatgaaaacggtaagccagttgatattcaattgcgtgaccgtggtatatctgaacgtatg
attgaatcatttatgttggcagctaatgaaacagttgctaaaaactataatttgaaacat
gttccattcctttatcgtgtccatgaaaagccagatgatgaaaaggttaagcgtttcttc
gaatttgttgcagctatgggtgtagatgtacatggtaatttgaaagatatcagtcccaaa
atgttccaaggtgttttagcacaagttactggtacacctgaagaagcagtcgttactatt
atgttgcttagaagtatgcaacaagctagatattctgatgagccactgggtcactttggt
cttgctgccaagtactatactcatttcacatcaccaattcgtcgttatcctgacttgacc
gttcatcgtatgattcatagctatgctgaaaatggctttactgatgatgaaaaggccaaa
tggggcggaaagcttaaggagatcggtgatcatacttctggtcgtgaaagaaagtctatt
gacgctgaacgtgctgttgatgatcttaagaagacagaatacatggctgatcaagtcggt
gagacctttgacgctgtcgttagttcagtaacaagttttggtatgtttattcaattggat
aatactatcgaaggattaattcatatttctaatatgaaagatgattattatgaattcgat
gaaaagagtatgtcgatgcatggtagaggaactggaaagacctttaaagttggtcaacca
attcaagttaaactaatgcgtgctgatgttgaacatagacaaattgactttgaaagagtt
ctaactccagaagaagctgaacaagttaagaagcgtgaagcagaattcgccaagcgccgt
gcaagtcacagtagaagtgatcatcgtcacagtaataacggtggtcgttcaaatggtaat
ggtcatagcaacaatcatggtcattcaaataataatgggagtaacaaaagacgcagtaaa
tacgaaagtcggtga
DBGET
integrated database retrieval system
