Companilactobacillus allii: BTM29_10935
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Entry
BTM29_10935 CDS
T05413
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lalw
Companilactobacillus allii
Pathway
lalw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lalw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTM29_10935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lalw03019
]
BTM29_10935
Messenger RNA biogenesis [BR:
lalw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTM29_10935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
APX73031
UniProt:
A0A1P8Q5C2
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All DBs
Position
2211636..2213327
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AA seq
563 aa
AA seq
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MTVKVKNNEVSIFAIGGLGEIGKNMYGVQYQDELVVIDAGIKFPEDELLGIDYVISDYSY
LVENQDKIKGLFITHGHEDHIGGIPYLLQQLPNIPVYAGPLACALINGKLEEHDLLKSTK
MNVINEDTVIKFPKLSVSFFRTTHSIPDTLGIAVHTPQGIIVETGDFKFDLTPVAGLPAP
NLQRMAQLGQEGVLCLMSDSTNAEIPTFSKSERSVGLTIHQIFETIQGRIIFATFASNIY
RVSQAVDAAIQQGRKIAVFGRSMEQAIANGRELGYLNIPDEMFIDPHALNRTPASETLIL
CTGSQGEPLAALSRIANGTHRQITIQPGDTVIFSSNPIPGNTISVNHLINQLSEAGAEVI
HGKVNNIHASGHGGQTEQELMLRLMKPKFFMPIHGEYRMLKIHTELAQLCDVPLDHSFLL
ENGDVLALTKDSAHVAGHFPAGDVYVDGKGVGDIGNVVIHDRQVLSEEGMVVVVATIDYQ
KHIVLAGPDILSRGFVYMRESGELINQAQKRVFHLIKNAFDDDENKVTEALLKRIIIEGL
QEFLYKRTARNPVILPMLISTSI
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtaaaagtaaagaataatgaagtttccatttttgccatcgggggccttggtgaa
attggtaaaaatatgtacggtgttcaatatcaagatgaacttgttgttattgatgccggt
atcaagtttccagaagatgaactactaggtatcgattatgtcatttctgactatagctac
ctagtagagaatcaagataagataaagggtttgtttattacccatggtcacgaagatcat
atcggtggtattccttacctactacaacagcttccaaatataccagtttatgccggtcca
ttagcttgtgcattgattaacggtaagttggaagaacatgatttacttaagtctactaag
atgaatgttattaatgaagacactgttattaagtttcctaaactcagtgtttcattcttt
agaacgactcattcaattccagatacactaggtattgcagttcatacacctcaaggtatt
attgttgaaactggtgacttcaagtttgacttaacacctgttgctggtttgccagcaccc
aacttacaacgtatggcacagcttggacaagaaggtgttttgtgcttaatgtccgatagt
acgaacgctgaaataccaactttctctaagtcagaacgttcagttggtttaactattcat
caaatatttgaaacaattcagggaagaatcatctttgctacctttgcttcaaatatctat
cgtgtttctcaagccgttgatgccgcaatacagcaaggccgaaagatcgccgtattcgga
cgaagtatggagcaagctattgccaatggtcgtgaattgggatacttaaatattccagat
gaaatgttcattgacccacatgctcttaaccgtactcctgccagtgaaacattgattctg
tgtactggttcccaaggtgaaccattagctgctttaagtagaattgctaacggtactcac
cgtcaaattacaattcaacctggtgatacagttattttctcaagtaaccctatccccggt
aacacaataagtgttaaccatttgataaaccaactttctgaagctggtgctgaagttatt
catggtaaagttaataatatccatgcttctggtcatggtggtcaaacagaacaagaatta
atgcttcgcttgatgaagcctaagttctttatgccaattcacggtgaatacagaatgtta
aagattcataccgaattagctcaattgtgtgacgttccgttagatcattcattcctactt
gaaaacggagacgtcttagctttaactaaggattcagctcatgttgctggacacttccct
gctggagacgtttacgttgatggtaaaggtgttggtgatattggtaacgttgttatccac
gatcgtcaagttctttcagaagaaggaatggtcgttgttgtagcaacaatcgactatcaa
aaacatattgttttagccggtcctgatattctatccagaggattcgtatatatgcgtgaa
tctggagaattgattaatcaagctcaaaaacgtgttttccatttaattaagaatgctttt
gatgacgatgaaaacaaagtaaccgaagcacttctaaaacgtattatcattgaaggatta
caagaattcctatacaagcgtacagctagaaatcctgttatcttaccaatgttaatttca
acttcaatttag
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