Luteolibacter ambystomatis: KBB96_13955
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Entry
KBB96_13955 CDS
T07769
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lamb
Luteolibacter ambystomatis
Pathway
lamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBB96_13955 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lamb03019
]
KBB96_13955 (rnr)
03016 Transfer RNA biogenesis [BR:
lamb03016
]
KBB96_13955 (rnr)
Enzymes [BR:
lamb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KBB96_13955 (rnr)
Messenger RNA biogenesis [BR:
lamb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KBB96_13955 (rnr)
Transfer RNA biogenesis [BR:
lamb03016
]
Prokaryotic type
tRNA degradation factors
KBB96_13955 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
WHD_MCM4
Motif
Other DBs
NCBI-ProteinID:
QUE49969
UniProt:
A0A975G602
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Position
3659256..3661691
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AA seq
811 aa
AA seq
DB search
MAEESMRTQVLEWMRSPKYRPMTRSELARKLEIPSAARSELREVLRALVHEGQIVEGKKS
SYELRGKKGDQLTGTLRFHPKGHAFFYPNAADEQNLATGIDLKKHSRIYVPRRDASTALD
GDKVRISVRMPSPKRESRHQKGDRHLAEAPEDDAKGHVEQILERRSGRLVGVFRQKGKHS
WVECSDTSLDGPVELHGDTTAQPGQTVVVELEQWDKRDQAPRGRILEVLGWPGDPGVDII
AVIHRHGLRTSFPEAVIDETRNTEETPAPAEIARRSDWRDRLVITIDPADAKDHDDAIWL
EKTDKGWTLAVHIADVSHYVKPGTALDKEATERGNSTYLVDRVLPMLPPELSNGICSLKP
DVDRLTKCALMEISPKGEIKKARFLDAVIHSRAKLSYEQAQAILDGKSAPEGSEAGLEDL
VKEAWKMASTLRRRRFANGALDLEMPEIRIKLDDKGRACGVIPVEHTASHQLIEECMLAA
NEAVARVLKVNQKPAVHRIHEDPDFSKLFEFGETAKLHGYKPGDLSNREHIQKLLDDSKG
SPEEHAIKLGLLKSLKRAAYSPDAIGHYGLAKADYCHFTSPIRRYADLIVHRALQPFLDN
APKNPDRTPSQGDLREISRHISDTERVSADAESETKQLKMMEFLGRVADLEDPIVFDGLV
TDVRPMGLLVEIPDLGIRGAVKREDLPGGRWRFEGHRGAWTNWEGQSIVLGMRIPLEVTG
VDRVRRFVDFRIAVGTENAAGTHGSFNQPDMPVTKKKTPPKDSRPPKPTKPSKKSHKKEF
EGDAAKPDGWKPFSKAKSGGKKKHGQKKKRK
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaatcgatgcggacgcaggtcctggagtggatgcgttcgccgaaataccgc
ccgatgacgcggtcggagttggcgagaaagctggagatcccatcggccgcccggagcgag
ttgcgggaggtgcttcgcgcgctggtccatgagggacagatcgtggaaggcaagaagtcc
agctacgaactgcgcggcaagaaaggtgaccagcttaccggaaccctccgtttccatccg
aagggccacgcgtttttctacccgaacgccgcggacgaacagaacctcgccaccggcatc
gatctcaaaaaacactcccgcatctacgtcccgcgacgcgatgccagcaccgcgctggat
ggcgacaaggtgcggatttccgtgcggatgccttcgccgaagcgcgagagcaggcaccag
aaaggcgaccgccacctcgccgaagcccccgaggatgatgccaagggccatgtcgagcag
atcctggagcgccgctcgggccgactcgtcggcgtcttccggcaaaagggcaagcactcg
tgggtcgaatgctcggacacctcgttggacggcccggtggaactccacggcgataccacc
gcgcagcccgggcagacggtcgtggtggaactcgaacaatgggacaagcgcgatcaagct
ccacgcggacgcattctggaggtgctgggctggccgggtgatcccggtgtggacatcatc
gcggtgatccatcgccacggtctgcgcacctcattcccggaagcggtgatcgatgaaacc
cgcaacaccgaggaaacacccgcgccagcggaaatcgcgcgccgttccgattggcgggac
aggctggtcatcaccatcgaccctgcggacgcgaaggatcatgacgacgcgatctggttg
gagaagaccgacaagggctggacgctcgccgtccacatcgcggacgtctcccactatgtg
aagcctggcaccgcgctcgacaaggaagccaccgagcgcggcaactccacctatctcgtc
gaccgggtgctgccgatgctgccgccggaactcagcaacggcatctgctcgctgaagccg
gatgtcgaccgcctcaccaaatgcgcgctgatggaaatcagcccgaagggtgagatcaag
aaggcgcgcttcctggatgcggtcatccacagccgcgcgaaactttcctacgaacaggcc
caggcgattctcgatggcaagtccgcgccggaaggctccgaagctgggctggaggatctg
gtgaaggaggcctggaagatggcttccacgctgcgccgccgccgctttgccaatggcgct
ctggacctggagatgccggagatccgcatcaagctggatgacaagggccgtgcctgcgga
gtcattccagtggaacacaccgccagccaccagctcatcgaggaatgcatgctcgcggcg
aatgaagctgtcgcgcgcgtgctgaaggtgaaccagaagcccgccgtccaccgcattcac
gaggacccggatttctcgaagctcttcgaattcggcgagaccgcgaagctccacggctac
aagcccggcgatctcagcaaccgcgagcacatccagaaactgctggatgattccaagggt
tcgcccgaggagcacgcgatcaagctgggcctcctgaaaagcttgaaacgcgcggcctat
tcgccggacgccatcggccactacggtctggcgaaggcggactactgccacttcaccagt
ccgatccgccgctatgcggacctgatcgtccaccgcgcgctccagccgttcctggacaac
gcgccgaagaatcccgaccgcacgccctcccaaggcgacctccgcgaaatctcccgccat
atctcggacaccgaacgcgtgtccgcggatgccgagagcgagacgaagcagctcaagatg
atggaattcctcggccgtgtcgcggacttggaagatccgatcgttttcgatggcctggtg
acggacgtgcgcccgatggggctgcttgtggaaatccccgacctcggcatccgcggcgcg
gtgaagcgcgaggatctgccgggcggacgctggcgcttcgagggccaccgcggcgcgtgg
acgaactgggaaggccagtcgatcgtgctcgggatgcgcattccgctggaagtcaccggc
gtggaccgggtccggcgtttcgtggacttccgcattgcggtgggcactgagaatgccgcg
ggcacccatggatcgttcaatcaaccggacatgccggtgacgaagaagaagactccgccc
aaggactcccgtccgccgaaaccaaccaagccttcaaagaaatcccacaaaaaggagttc
gaaggagatgccgccaagccggacggttggaaacctttctccaaggccaagagcggtgga
aagaaaaagcacggccagaaaaagaagcggaagtaa
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