Luteolibacter ambystomatis: KBB96_16880
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Entry
KBB96_16880 CDS
T07769
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lamb
Luteolibacter ambystomatis
Brite
KEGG Orthology (KO) [BR:
lamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lamb03016
]
KBB96_16880
Enzymes [BR:
lamb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KBB96_16880
Transfer RNA biogenesis [BR:
lamb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KBB96_16880
Prokaryotic type
tRNA splicing ligases
KBB96_16880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QUE50525
UniProt:
A0A975G870
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All DBs
Position
4379474..4380955
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AA seq
493 aa
AA seq
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MNVHKTDEALGFIPLPNDSGKPITVVGTDAIRDNFDATCLQQAINSRLAPGVTDVILNPD
GHAGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQLDIPEDAIVDKKVRRALINAIIER
TPTGAGRGQRTVKKSRRVDQATGVLAVTEGATTRVCEALGIPPEWADRCEDSTHFGHNGT
YDALRSRLDFILASGRVRNFASKIEQLGSYGGGNHFGECEITRLSDRPSMLAAADTFGLK
DGHVSFLSHCGSRGLGNLLAQGQFKDLEHKFRQWATPFPAGDKQLVYAPLGTPEADAYLD
DMAIGANFATVNHLLINALVLEAFQEVLPGAKGELVYFISHNIAREEVVDGKKAWVHRKG
ATRAIPGGHFSLAGTPFAATGHPILLPGNPRDGSVVMVAKGGAERTAWSVNHGAGRQMGR
KHAARTLDQKTVDADFDASDILTNCRQYPIDEAPDAYKNFPEVLRSVEAAGLAETVAKLQ
ARFVIKDSSEADD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtacacaaaaccgatgaagcattgggcttcatccccctccccaacgattccggg
aagccgatcaccgtggtcggaaccgatgcgatccgtgacaactttgacgccacctgtttg
cagcaggcgatcaattcccgtctcgctccgggtgtgacggatgtgatcctcaatccagac
ggtcatgccggatacggcgcgccggtcggctgcgtgatggtttcgccgacccacatctat
ccgggcccggtgggcgtggacatcaagtgctccatgtcgctgctccagcttgacatcccc
gaggacgcgatcgtggacaagaaggtccgccgcgcgctgatcaatgcgatcatcgagcgg
actccaacgggcgcgggccgtggccagcgcacggtgaagaagtcgcggcgtgtcgatcag
gccaccggagtgctcgccgtgacggagggcgcgaccacccgtgtctgcgaggcgctcggc
atcccgccggagtgggcggaccgatgcgaggactccacccacttcggtcacaacgggacc
tacgatgcgcttcgtagccggctcgatttcatcctcgcctccgggcgggtgcggaacttc
gcgtcgaagatcgaacagctcggatcgtacggaggaggcaaccacttcggcgagtgcgag
atcacgcgcctgtcggaccgcccatcgatgctcgccgccgcggataccttcggtttgaag
gacggccatgtgtcgttcctcagccactgtggatcgcgcggactcggcaacctgctcgcg
cagggccagttcaaggatctggagcacaagttccgccagtgggccacgccgttcccggcc
ggtgacaagcagctcgtgtacgcgccgctcggaactccggaggcggatgcttacctcgat
gacatggccatcggcgcgaatttcgccacggtgaaccacctgctcatcaacgcgctggtg
ctggaggccttccaggaagtcctgccgggcgcgaagggtgagcttgtctacttcatctcg
cacaacatcgcgcgtgaggaagtggtcgatggtaagaaggcgtgggtccaccgcaagggc
gcgacccgcgcgatcccgggcggccacttctcgctggctggaacgccgttcgcggccacc
ggtcatccgatcctgctgccgggaaatccgcgcgatggctcggtggtgatggtggcgaag
ggtggtgccgagcgcaccgcctggtccgtcaaccacggcgccggacgacagatgggacga
aagcacgcggcacggacgctcgaccagaagacggtggacgcggactttgatgcctcggac
atcctcaccaactgccgacagtacccgatcgacgaagccccggacgcctacaagaacttc
ccggaagtgctgcgaagcgtcgaggccgccgggctcgccgaaaccgtggcgaaactccag
gcgcgtttcgtgatcaaggattcctcggaagcggatgactga
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