Lacinutrix sp. 5H-3-7-4: Lacal_0199
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Entry
Lacal_0199 CDS
T01533
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lacal_0199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lan03019
]
Lacal_0199
Enzymes [BR:
lan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lacal_0199
Messenger RNA biogenesis [BR:
lan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lacal_0199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MTS_N
Cas3-like_C_2
AAA_19
NAT10_TcmA_helicase
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AEH00052
LinkDB
All DBs
Position
216434..217669
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AA seq
411 aa
AA seq
DB search
MSFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPIL
QLLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKD
VLRKGVDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAE
KQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLL
RNTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNILI
ATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYIKTI
QQLINLQLDIVEDHPYPLDPKAKPQVHKKQGSKYKKGRKSEASKKKKKRWY
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagatttaaaacttaacagaccattattacgtgccattgccgaaaaaggt
tatgataacccaaccttaattcaagagcgtacaatacctttagttttaaataaaaaagac
gtcattgcctctgctcaaaccggtaccggaaaaacagcagcttttgcattacctatacta
cagttgctttacgataaacaagatgctgccaaaaatcaaaaaaaagttcgtgctttaatt
ataagccctacacgagaattagcaatacaaattcaagaaaattttcaagactatttaata
tatactaacctacgttctacagttatttttggaggtgcgtccatagaaccacaaaaagat
gttttaagaaaaggcgtagatattttaatagctactcctggtagattattagatttacac
aaacaagatgaagtaaatttagactatgttgaaaccttagttttagacgaagcagattta
atgcttgatatgggttttatagacgatgttaaaaaaattgaaagactttgtcctgcagaa
aaacaaatccttctgttttcagcaacaatgccatataaggttgaacaattagcaaaaacc
attttaaacaacccaaaacgtgttgaagtatcccagaattcatcaacttcaacaaacata
aatcaagcactttattacgtaccaaaacctaaaaaaatagaattatgtttacacctatta
cgtaatacagtaaaaggtaaaataattatttttagacgcacaaaatatggtgtagataaa
cttgaaaaaacgcttttaagaaacaattataaagccgatagtattcatggtgataaaagc
caaaccttaagacaagaagctttaaatagattcaagaaaaatgaggttaatattttaata
gctacagatgttgctgcgcgtggtatagatatagaaaatgtagatgcagtaatcaatttt
gatatgccaaacgtaccagaaacttacgtacatagaattggtagaaccggaagagctgga
aatactggtatggcgtattcattttgttctgcagatgaaaaagagtatataaaaaccata
caacaacttattaatttacaattagatattgtagaagatcatccatatcctttagatcct
aaagcaaaacctcaagttcacaaaaaacaaggttctaaatataaaaaaggaagaaaaagt
gaagcttcaaaaaagaagaaaaaacgttggtattaa
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