Lacinutrix sp. 5H-3-7-4: Lacal_0933
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Entry
Lacal_0933 CDS
T01533
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03410
Base excision repair
lan03430
Mismatch repair
lan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lacal_0933
03430 Mismatch repair
Lacal_0933
03440 Homologous recombination
Lacal_0933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lan03400
]
Lacal_0933
DNA repair and recombination proteins [BR:
lan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Lacal_0933
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Lacal_0933
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lacal_0933
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF8600
Motif
Other DBs
NCBI-ProteinID:
AEH00781
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Position
1085063..1086754
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AA seq
563 aa
AA seq
DB search
MRWTLKPKPNLETVQFLQHALQVEEPVATLLAQRGIETYEQAKDFFRPNLKHLHDPFLMK
DMLKAVKRIEVAIANNENILVYGDYDVDGTTAVSLMSSYLKSEYPNVATYIPDRYGEGYG
ISFQGIDFAEDNNFTLIIALDCGIKAIDKIAYAEEKNIDFIICDHHRPGDKVPNAVAVLD
PKQSDCNYPYKELCGCGVGFKLIQALASKKGKTVEDLQEYLDLVATAIGADIVPITGENR
ILAYFGLQVINSAPRAGFKAIINQIKKETLTITDVVFVIAPRINAAGRMKHGQYAVDLLT
ETNVQTAQVYAQEIENFNTDRREADKQITIEALQQIENNNEKDRLTSVVYQQDWHKGVIG
IVASRLIETYYRPTLVFTKSGNKLAASARSVKGFDVYNALEACAEHIEQFGGHKYAAGLT
LKEENYEAFKQKFEEVVQATIDKKLLTPEITIDRQIELNDISDKFYRILSQFAPFGPGNM
SPVFMTNNLQDTGYGKCVGEDDKHLRITVKQPGSNAIVCIGFGLGDKLNLIKNNKRFKAV
YSIDENEWQGNVSLQLKLRDLKE
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggactttaaaacctaaaccaaatctagaaaccgtacaatttttacaacatgct
ttacaagtagaagagcctgttgcaacacttttagcacaacgcggtattgaaacctacgag
caagcaaaagacttttttagaccaaatttaaaacatttgcacgatccttttttaatgaag
gatatgctaaaagcagtaaaacgaattgaggtagcaatagcaaacaacgaaaatatttta
gtgtatggcgattacgatgtagatggcacaactgccgtatcgttaatgtcatcgtattta
aaaagtgaatatccaaacgttgccacttacattccagaccgttatggagaaggttacggc
atctcttttcagggtattgattttgccgaagacaataattttacactaattattgcatta
gattgtggtataaaagctattgataaaatcgcttacgcggaagaaaaaaacatcgatttt
ataatttgcgaccaccacagacctggagacaaagtcccaaatgcagtagccgttttagac
ccaaaacaaagtgattgtaattacccttataaagaattatgtggttgtggtgtaggtttt
aaattaatacaagctttagcttcaaaaaaaggaaaaaccgttgaagatttgcaagaatat
ctagacttggtggctacagcaattggagcagatattgttccaataactggagaaaataga
atattagcttattttggtttacaagtaataaatagtgcgccaagagcaggatttaaggcg
ataataaatcaaattaaaaaagaaacacttaccattacagatgttgtgtttgttattgca
ccaagaataaatgccgcaggtagaatgaaacacggccaatatgccgtagatttattaacc
gaaactaatgtgcaaacggctcaagtttacgctcaagaaattgaaaattttaatacagat
agacgtgaagccgataaacaaattactatagaagctttacaacaaattgaaaataataac
gaaaaagaccgcttaacctcagtcgtttatcaacaagattggcataaaggcgttattggc
attgtagcaagtagattaatagaaacctattatagaccaacattagtatttacaaaaagt
ggaaataagttagcagcttcggcacgctctgtaaaaggtttcgatgtttataatgcttta
gaagcttgtgctgaacacatagagcaatttggtggccataaatatgctgctggcttaaca
cttaaagaagaaaactacgaagcttttaaacaaaagtttgaagaagtagtacaagctaca
atagataaaaaactactaactccagaaattacaatagataggcaaatagaacttaatgat
atttcagataaattctacagaatattaagccaatttgcaccatttggtccaggaaatatg
tctcctgtttttatgactaacaatttacaagatactggttatggtaaatgcgtaggtgaa
gacgataaacatttacgaataacagtaaaacaacctggtagtaatgcaattgtttgcatt
ggttttggacttggcgataagcttaacttaattaaaaataacaagcgttttaaagccgtt
tattctatagatgaaaatgaatggcaaggcaatgtgtctttacaactaaagttaagagat
ttaaaagaataa
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