Lacinutrix sp. 5H-3-7-4: Lacal_1309
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Entry
Lacal_1309 CDS
T01533
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03030
DNA replication
lan03430
Mismatch repair
lan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lacal_1309
03430 Mismatch repair
Lacal_1309
03440 Homologous recombination
Lacal_1309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lan03032
]
Lacal_1309
03400 DNA repair and recombination proteins [BR:
lan03400
]
Lacal_1309
Enzymes [BR:
lan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Lacal_1309
DNA replication proteins [BR:
lan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Lacal_1309
DNA repair and recombination proteins [BR:
lan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Lacal_1309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Csd3_N2
Motif
Other DBs
NCBI-ProteinID:
AEH01157
LinkDB
All DBs
Position
1489402..1493763
Genome browser
AA seq
1453 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIESEDYLVKPEGFNIPY
DAEKIHGISTELAQEQGVELIEVLEKFNIALNKTKFVVGQNVKFDLNIMGAEFVREDIAN
QLQELPVLDTCTEHTASLCQIPGGRGGRFKLPTLTELHQYLFNQPFAEAHNATADVEATT
RCFLELIRRQQYTKEQLDVQPDYFENFSEANPQPIQLIGLKHINLKKESAKINARLQKEQ
SSGISSEEIKENIADLQAVDFVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHA
NMMGAFHFVNAVNKHNKAVEGKTTDAKKIKPIVGCEFFVCENHLDKSRKDNGYQIVLIAK
NKNGYHNLAKLSSHAFTDGFYYVPRIDKKLIEQYKEDLICLTGNLYGEVPSKVLNVGENQ
AEEALIWWKETFQDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDA
NAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVV
DKIEGFQLARDVLLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGEELSEE
VVERLDFELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNID
PMKYNLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKS
SIRDTARVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLEKINELLNISE
GEDLQAETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVV
EDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQ
YESPGMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYL
KETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHD
AKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQV
TFFMEECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDG
PYKSIFDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYG
AKHQENENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFR
TEMKNFCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGKGWALFTIEDYTDSFEFR
IFGEDYLKHRPFLLKNTFVHVKTFVREGWVNRDTGKKSDPRLQFNSFQLLHDVMDKYVRK
LSIQLNIKELESEKIQNLKSLISMHPGSHMLDFVIYDNREQIKLEMPSRRQKVKVTQELL
NALEEDQIYYKLN
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatatttgatacagaaacaaccggtttaccaaaacgttgggatgcaccaatt
acagatacagataattggccaagatgtatccagattgcatggcagttacatgatgctatg
ggaaactgtattgagagtgaagattatttagtaaaaccagaaggttttaatataccttat
gatgccgaaaaaattcatggtatttctacagagttagcccaagaacaaggagttgagcta
atagaggttttagagaagtttaatatagctttaaataaaacaaaatttgttgtaggtcaa
aatgtaaagttcgatctcaatataatgggagcagagtttgtacgcgaagacattgcaaat
caattacaagaactaccggttttagacacttgtacagagcacacagcaagtttgtgccaa
attcctggtggtcgtggcggtagatttaagctaccaactttaacagagttacatcaatat
ttgtttaatcaaccatttgctgaagcgcacaacgcaactgccgatgttgaagcaacaaca
cgttgttttttagaattaataagaaggcaacaatacaccaaagaacaacttgatgtacag
ccagattatttcgagaatttctctgaagccaatccgcaacctattcagttaattggctta
aagcacattaatttaaaaaaggaaagtgctaaaattaatgccagactacaaaaggaacaa
tcaagcggtatttcttctgaagaaataaaggaaaatattgccgatttacaagctgtagat
tttgtgcatttacacaaccactctcagttttcggtattgcagtcaacaatgagtgttgca
gatattgtagctgttgcagcagagcataatatgcctgcagtagcactaacagatcatgca
aacatgatgggagcatttcactttgttaatgcagtaaacaaacataacaaagcagttgaa
ggtaaaacaacagatgcaaaaaaaataaaaccaattgtaggatgtgagttttttgtgtgt
gaaaaccatttagataaatctagaaaagataatggttaccaaattgtattaattgcaaaa
aataaaaacggttaccataaccttgctaaactttcgtcgcatgcatttacagatggattt
tattatgtgcctagaatagataaaaaactaattgagcagtataaagaagacttaatttgt
ttaacagggaacctttacggcgaagtgccaagtaaagttttaaatgtaggagaaaatcaa
gccgaagaagctttaatttggtggaaagaaacttttcaggacgacttgtatgtagagctt
atgcgccacaatcaagaagatgaaaatcgtgtaaatccaaccttaataagtttagcaaaa
aagcatgatgtaaagcttgttgcaacaaataatacctattacgcaaagcaagaagatgct
aatgcgcacgatattttattgtgtgtaaaagatggtgaaaaacaagcaacaccaataggt
cgtggtcgtggctatcgttacggtttacctaaccaagaatattatttcaagtcggcagaa
gccatgaaaaacatctttaaagatgtgccagacgcaattattaatattcaagaagtagta
gataaaattgaaggatttcaattagctcgtgatgtattattaccagccttcgatattcct
gaggaatttcagcataaagaagatttagaagatggcggcaaacgtggagaaaatgcattt
ttaaggcatttaacttacgaaggagctaaaaaaagatatggcgaagaactatcagaagaa
gtagtagagcgtttagattttgagttaagcgttattgaaaaaacaggatatcctggttat
ttcttaattgtagaagattttattcgtgaagcccgaaatatggatgtttctgttggtcca
ggtcgtggatctgcagcaggttctgtagtggcttattgcctttggattaccaatatagac
ccaatgaagtataatttactttttgagcgttttttaaatccagatcgtgtaagtatgcca
gatattgatattgattttgacgatgaaggtcgaagtcgtgtcatggattatgtaatagaa
aaatacggtagtaatcaagtagcgcaaattattacttatggtacaatggcagcaaaatct
tcaattagagatactgccagagttttagatttaccgttatttgatgccgataggatagcg
aagcttattccaacaatgtctaaattaggtaagatatttggactatcggaaaaagaatta
ggaagcaaatttagagctgaagatttagagaaaataaacgagcttttaaatatctctgaa
ggagaagatttgcaagccgaaaccgtaaacattgcaagatcacttgaaggctctgtaaga
aatacaggtattcacgcttgtggtgtaattattacgccagacgatattacaaaattcgtt
cctgtttctgttgctaaagattcagatttatatgttacccaatttgataactctgtagta
gaagatgcaggtttattaaaaatggatttcttaggattaaaaaccttaaccttaattaaa
gatacggttaagattgtaaaagcaaaacatggcatcacgcttgatccagaaaactttcct
ttagatgatgaagaaacttatgctttattccaacgaggagaaactgttggtgtattccag
tatgaatctcctggaatgcaaaaacaccttaaagacttaaaaccaacggtttttgacgat
ttaattgccatgaatgcactatatcgaccaggaccaatggaatacattccaagttttgtt
cgtagaaaacatggtgatgaagatatagagtacgatttaccagcaatggaagagtactta
aaagaaacatacggtattacagtttaccaagagcaagtaatgttgctttcacaaaaacta
gcagattttactaaaggtgaagccgatgttttacgtaaagcaatgggtaaaaagcagatt
gcggtactagataaaatgaaaccaaaatttatcgagcaagcaagtgctaaaggtcacgat
gctaaaaaacttgagaaaatttggaaggattgggaagcttttgcaagttatgcttttaat
aaatcgcactctacatgctatgcttggattgcttaccaaaccgcttatttaaaagcacat
tatcctgcagaatatatggcagcagtactgtctaataacatgaacgatattaagcaggtt
acatttttcatggaagagtgtaaacgtatgaaattgcctgtacttggtccagatgttaac
gagagttattataaattctctgtaaataaagacaatgcagtgcgttttggaatgggagca
ataaaaggtgttggtcatggtgcggtaatgactattgtagataaccgtaaaaaagatgga
ccatataaatctatttttgatattgcaaaacgaatagatttgcgtgcagccaataaaaaa
gctttcgagaatttagccttagctggtggttttgattgttttacagatacgcatcgtgca
cagtattttcataaagaaggtagcgatttaacttttctggaaaaagcaattaaatatggc
gcgaaacatcaagaaaatgaaaattctgcacaagtaagtttatttggtggaggaagtgat
gtgcaaatagccgaaccagaagtaccgccatgtgaaacttggggaactatggagaagtta
gcgcaagaacgagaggttgttggtgtttatatttctggtcacccattagatgattttaga
accgaaatgaaaaacttctgtacgggaaccattgcttattttaatgatttgcatgaacat
gttaataaagatataacctttggaggtgttgttacagatgtgcaacatcgtgtaagtaaa
caaggtaaaggttgggcattatttactattgaagattatacagattcttttgaatttaga
atttttggagaagactatttaaaacatcgtccatttttactaaaaaacacttttgtacac
gtaaaaacttttgtacgtgaaggttgggtgaatagagatactggtaaaaaaagtgaccca
cgattacaatttaatagtttccaattgttgcatgatgttatggataaatacgtacgtaaa
ttatctatacaattaaatattaaagaattagaatcagaaaaaattcagaatttaaaatct
ttaatttccatgcatccaggaagccatatgcttgattttgttatttacgataatagggag
caaataaaactagaaatgcctagtcgaagacaaaaagtaaaagttactcaagagttgtta
aatgccttagaagaagaccaaatttattataagttgaattaa
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