Lacinutrix sp. 5H-3-7-4: Lacal_1531
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Entry
Lacal_1531 CDS
T01533
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lacal_1531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lan03019
]
Lacal_1531
03110 Chaperones and folding catalysts [BR:
lan03110
]
Lacal_1531
03029 Mitochondrial biogenesis [BR:
lan03029
]
Lacal_1531
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lan04147
]
Lacal_1531
Enzymes [BR:
lan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Lacal_1531
Messenger RNA biogenesis [BR:
lan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Lacal_1531
Chaperones and folding catalysts [BR:
lan03110
]
Heat shock proteins
HSP60 / Chaperonin
Lacal_1531
Mitochondrial biogenesis [BR:
lan03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Lacal_1531
Exosome [BR:
lan04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Lacal_1531
Exosomal proteins of other body fluids (saliva and urine)
Lacal_1531
Exosomal proteins of breast cancer cells
Lacal_1531
Exosomal proteins of colorectal cancer cells
Lacal_1531
Exosomal proteins of bladder cancer cells
Lacal_1531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
NNH2
Motif
Other DBs
NCBI-ProteinID:
AEH01379
UniProt:
F6GK28
LinkDB
All DBs
Position
complement(1739616..1741250)
Genome browser
AA seq
544 aa
AA seq
DB search
MAKDIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIISRSFGAPVVTKDGVSVAKEIE
LENPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGID
KAVTALVEDLGKQSKEVKNSSDKIKQVASISANNDEVIGELIANAFGKVGKEGVITVEEA
KGTDTYVDVVEGMQFDRGYLSPYFVTDSEKMITDLENPYVLLYDKKVSTMKDLLPVLEPV
AQTGKPLLIIAEDVDGEALATLVVNKLRGSLKIAAVKAPGFGDRRKAMLEDIAILTGGTV
ISEERGFTLENATLEMLGTAERITIDKDNSTIVNGAGDKDMIKNRVNQIKSQIESTTSDY
DKEKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALV
RAKSVLEKITTENLDETTGIQIVARAIEAPLRTIVENAGGEGSVVVNKVSEGEKDFGYDA
KSESYVDMLKAGIIDPKKVTRIALENAASVAGMILTTECALIDIKEDEPAGGMPPMGGGM
PGMM
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatataaaatttgatatagaagcccgcgatggcttaaaacgcggtgtagat
gcattagctaatgcagttaaagtaactttaggaccaaaaggtagaaatgtaattattagc
cgttcatttggcgcaccagttgtaactaaagatggtgtaagtgttgcaaaagaaattgag
ttagaaaacccattagaaaatatgggcgctcaaatggtaaaagaagttgcatctaaaacc
aacgatttagctggtgatggtacaactactgcgacagttttagcacaagcaattgtgaaa
gaaggtttaaaaaatgttgctgcaggtgcaaacccaatggatttaaaacgcggtattgac
aaagctgttactgccttagttgaagatttaggaaagcaatcaaaagaagtaaaaaactct
tcagataaaataaaacaagttgcatcaatatctgcaaataacgatgaagttattggtgag
ttaattgcaaatgcatttggtaaagtaggaaaagaaggtgtaataactgttgaagaggca
aaaggaacagatacttatgtagacgttgttgaaggtatgcaatttgacagaggttactta
tcgccttactttgttacagacagcgaaaaaatgattacagatttagagaatccttacgta
ttattatacgataaaaaagtctctacaatgaaggatttgttacctgttttagaaccagta
gcacaaacgggaaaacctttattaattattgcagaagatgtagacggagaagctttagca
actttagttgttaataaactaagaggttctttaaaaattgcagcggtaaaagctccagga
tttggagacagacgtaaagcaatgctagaagatattgctattttaactggaggaacagta
atatctgaagagagaggttttactttagagaatgctactttagaaatgttaggtacggca
gagcgtattacaattgataaagacaactctacaattgtaaatggtgctggagataaagac
atgattaaaaaccgtgttaaccaaataaaatctcaaatagagtctactactagtgattac
gataaagaaaaactacaagaacgtcttgctaaattagctggtggagtcgctgtactttac
gttggtgctgcaagtgaagtagaaatgaaagaaaagaaagatcgtgttgatgatgcttta
catgctacaagagccgctgtagaagaaggtattgttgccggtggtggagttgcattagta
agagcaaaatctgttttagaaaaaattacaacagaaaatttagacgaaactacaggaata
caaattgtagcaagagctattgaagcgccactaagaactattgtagagaatgctggtgga
gaaggcagtgttgttgtaaacaaagtttctgaaggtgaaaaagactttggttatgatgct
aaatctgaatcttatgtagatatgcttaaagctggaattatagatcctaaaaaagtaact
agaatagctttagaaaacgctgcatctgttgctggaatgattttaaccacagagtgtgct
ttaattgatattaaagaagacgaacctgctggcggaatgcctccaatgggtggcggaatg
ccaggaatgatgtaa
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