Lacinutrix sp. 5H-3-7-4: Lacal_1724
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Entry
Lacal_1724 CDS
T01533
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lacal_1724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lan03019
]
Lacal_1724
Enzymes [BR:
lan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lacal_1724
Messenger RNA biogenesis [BR:
lan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lacal_1724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEH01572
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All DBs
Position
1959063..1960397
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AA seq
444 aa
AA seq
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MSFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLL
HILSENPKEKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANI
RKGVDVLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQ
NLMFSATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKLISD
GNWKQVLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVAT
DIAARGLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEK
LIGEKLKVEILEGFEPDPNASTAPIKPGQNRQKRNPNKAKSQGSNSGKRNAKSSGNSSGN
GGRNRNRNKNKSRNSDRRSNTSRS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaacaattaggcttgtctgagcctttattaaaagctattagcaaaaaagga
tacgaaaatccatcaccaatacaagccaaagcaatacctccagttttagacggatacgat
gttttagcatctgctcaaacaggaacaggaaaaacagctggctttactttgccattattg
catattcttagtgaaaatccaaaagaaaaatttaggcctattcgtgctttggtattaaca
ccaacaagagaattagcagcacaagtttatgctaatgtaaaagaatatagtgagttttta
aatttacgaagcgttgtaatttttggaggtgtaaaccaaaaaccacaagttgcaaatatt
agaaaaggagtagatgttttagttgctactccaggtcgtttaatagatttaaacaatcaa
ggtttattgtctttaaaacgtgtagaaatttttgttttagatgaggcagaccgtatgtta
gatatgggttttttacgcgatatagaacgtgtaatgaaattgatgccagataaaagacaa
aatttaatgttttcggcaacattttctaaagacattaaaaaactagcatttaatatatta
aaaaacccagtacaagttgaagcaacaccagagaatacagctgttgaagcaatttctcaa
aaagtatatcgtgtagcaaaaggtttaaaaacaggattagtaattaaactaattagtgat
ggtaattggaaacaagttttagtttttactcgaactaaacatggagcaaataagttaact
aaaaaaatgattagctctggaattacagccgcagctatacatggtaataaaagtcaagga
gcaagaacaaaagctctaaaaggttttaaagacggaactattagagtaatggttgcaaca
gatattgctgctcgtggtttagacataccactattaccgcacgttattaacttcgagatt
ccaaatatttctgaagattacgtacacagaataggtagaacaggtagagcaggagcaaaa
ggagaagctatttctttagtaagtgcagacgaaactcaatatttaagagatattgaaaaa
ctaataggagaaaaacttaaagttgaaattcttgaaggttttgaaccagatccaaatgct
tctacagcaccaataaaacctggtcaaaatagacaaaagagaaatcctaataaggcaaaa
tctcaaggctctaattctggaaagcgaaatgctaaaagtagcggaaatagttctggtaat
ggtggaagaaaccgtaaccgaaataaaaacaaaagccgaaatagcgatagacgctcaaac
acctctagaagttaa
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