Lacinutrix sp. 5H-3-7-4: Lacal_1827
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Entry
Lacal_1827 CDS
T01533
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lacal_1827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lan03021
]
Lacal_1827
03400 DNA repair and recombination proteins [BR:
lan03400
]
Lacal_1827
Enzymes [BR:
lan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lacal_1827
Transcription machinery [BR:
lan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lacal_1827
DNA repair and recombination proteins [BR:
lan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lacal_1827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEH01673
UniProt:
F6GE66
LinkDB
All DBs
Position
2061294..2065595
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNAEGEPLQKMDFLTEEEYLNILETLPQDNNY
LEDTDPNKFIAKMGAECLIDLLARIDLDILSFELRHKANTETSKQRKTEALKRLQVVEAL
RESNQNRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLFECGLPKNMAAELYKPFIIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACAAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKLRTSTPEV
PVKGQGLTFYSAEEVTIAYNEKRVDLNAQIKVRTIDFNKDGELVPQIVETTTGRVLFNEK
VPAAAGFINQVLTKKSLRDIIGDILKVTSVPETAAFLDEIKTLGYNFAFRGGLSFSLGDI
IIPPEKQSMIDAANAKVDGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSVDCGTLRGVEVSALKKND
EVVEKLGARVLGRVALNDVYNPLTEELLVESGKLIDESIADKIENSPVDSVEVRSPLSCE
AKKGICAQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LVAKFDGVAEIEELKTVKGTDSEGNEIDIVISRTSELKLIDKKTGITLSTNNIPYGSTIF
IKSGDELKTGDVVCQWDPYNGVIISEFAGKVRYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLIVEDGNGEAIRSYNLPVGAHIMIDDGEKVEIGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKLGDVKKYLVKLSSQILV
QENDFVKAGMPLSDGSITPNDILNIKGPAAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVKIIDSGDTIFLEDQLAHKSDFIEENDAIFGKKVVENAGESSKLKEGQIITSFEL
RDENSLLRREDKALVEARDARPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDSLEGLKENVIVGHRIPAGTGMRSYENIIVGSKEEFDQMMQAKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagcaagataagaatacagtacagagatttaacaaaatctcaattggttta
gcatcaccagaatctattttagcagaatctagaggtgaagttttaaagccagaaactatt
aattatcgtacacataaaccagaaagagatggtttattctgtgagcgtatttttggtcct
gtaaaagactatgaatgtgcttgtggtaaatataaaagaattcgctacaaaggtattgtt
tgtgaccgttgtggtgtagaagtaacagaaaagaaagtacgtcgtgatagagtaggacac
atcaaccttgttgtgcctgttgctcatatctggtacttccgttctttaccaaataaaata
ggttacttattaggattaccatctaagaaattagatatgattatatactacgaaagatat
gtagtaatccaacctggtaatgctaaaaatgcagaaggagaaccattacaaaaaatggat
ttcttaacagaagaagaatacttaaatattctagaaacgcttccgcaggataataactat
ttagaagacacagaccctaacaagtttatagctaaaatgggagctgaatgtctaatcgat
ttattagcacgtatagatttagatattttatcttttgaattacgtcacaaagcaaataca
gaaacgtctaaacaacgtaaaactgaagctttaaaaagacttcaggtagtagaagcttta
cgtgagtctaaccaaaatcgtgagaatcgtccagaatggatgatcatgaaggtagtgcca
attattccaccagaattaagaccattagtgcctttagatggtggacgttttgcaacttca
gatttaaatgatctttaccgtcgtgtaattattcgtaacaaccgtcttaaaagactagtt
gaaataaaagcaccagaagttattttacgtaatgaaaaacgtatgttacaagaatctgta
gattcattatttgacaacacacgtaaatcatctgcagtaaaaacagattctaacagacca
ttaaaatcattatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaattaaaatta
tttgaatgtggattgcctaaaaatatggcagcagaactttataagccttttattattcgt
aaattaatagaaagaggtattgtaaaaactgtaaaatctgcaaagaaaattatagataaa
aaagaacctgtagtttgggatattttggaaaacgttcttaaaggacatccagtattacta
aaccgtgcgcctacgctgcaccgtttaggtatacaagcattccaacctaaacttattgaa
ggtaaagctatacaattacacccattagcatgtgcggcatttaatgccgattttgatgga
gatcaaatggctgttcacttaccattaggaccagaagctattcttgaagcgcaattatta
atgttagcgtctcataatatcttaaatcctgcaaatggtgctccagtaactgtaccttct
caggatatggtacttgggttatattatatgaccaaattacgtacatctactccagaagtt
ccagtaaaaggacaaggtttaactttttactctgcagaggaagtaacaatagcttacaat
gaaaagcgtgtagatttaaatgcacaaataaaagtaagaactatagactttaataaagat
ggagaattagtaccgcaaatagtagaaacaactacaggtcgtgtattatttaacgaaaaa
gtaccagcagcagcaggttttattaaccaagtacttactaaaaaatctttaagagatatt
attggagatattttaaaagtaactagtgtaccagaaacagctgctttcttagatgaaata
aaaactttaggatataattttgcctttagaggtggtttatcatttagtttaggagatatt
attatcccaccagaaaaacaatcaatgattgatgcagcaaatgctaaagttgatggtatt
actggtaactataacatgggattaattacaaataacgaacgttataaccaggtaattgat
atttggacttcaacaaatgcagaattgacagagttgtctatgaagcgtattagagaagat
caacaaggatttaactcggtatttatgatgcttgattctggagcccgtggatctaaagaa
cagattcgccagcttacaggtatgcgtggattaatggcaaagcctaaaaaatctacagca
ggtggaggatctattattgaaaatccaattctttctaactttaaagaaggtctttcaatt
ttagaatactttatatcaacgcacggtgcacgtaaaggtcttgccgataccgcacttaaa
actgccgatgccggttacttaacacgtcgtttagtagatgtatctcaagatgtaattgta
aacagtgtagattgtggtactttaagaggtgtagaagtttctgcacttaagaaaaatgat
gaagttgttgaaaaattaggagctcgtgtcttaggacgtgttgcacttaatgatgtttac
aacccattaactgaagaattattagttgagtctggaaaattaattgatgagtcaattgca
gataaaattgaaaattcaccagtagactctgtagaagttcgttcaccattaagttgtgaa
gctaaaaaaggtatctgtgcacaatgttacggtagaaacttagcaactaataaaatggtt
caaagaggtgaagcagtaggagttgtagcagctcaatctattggagaacctggtacgcag
ttaacacttcgtacgttccacgtaggaggtattgcaggaaacatttcagaagaaaacaag
ctagtagctaaatttgatggagttgccgaaatagaagaacttaaaactgtaaaaggtaca
gatagcgaaggaaacgaaattgatatcgttatatctcgtacatcagagttaaagttaata
gataagaaaaccggaattacacttagtacaaataatattccttatggttctacaatcttt
ataaagagtggagatgaacttaaaacgggagatgttgtttgtcaatgggatccatataac
ggtgtaattatttctgaatttgcaggaaaagtaagatatgaaaatatcgaacaaggtgtt
acttaccaagtagaaattgatgagcaaacaggtttccaagaaaaagtaatttcagaatct
agaaacaaaaaattaattccaacacttattgttgaagacggtaatggtgaagcaattcgt
tcttacaacttaccagtaggtgcgcacataatgattgacgatggagaaaaagttgagatt
ggtaaagtcttagttaaaattcctcgtaaatctgctaaagcaggagatattacaggtggt
ttaccaagagtaacagagttatttgaagctcgtaatccatctaatccagcagtagtaagt
gcaattgatggtgttgtttcttttggaaaaattaaaagaggtaatcgtgagattattgta
gagtctaaactaggagatgttaaaaagtacttagtaaaattatcaagtcagattcttgta
caagaaaacgattttgttaaagcaggtatgcctttatcagacggttctataactccaaac
gatatcttaaacataaaaggaccagcagcggtacaacaatacttagttaacgaagttcaa
gaagtataccgtttacaaggtgtaaaaattaacgataagcacttcgaagttgttgtaaga
caaatgatgagaaaagttaagataattgattctggagatacaattttcttagaagatcaa
ttagctcataaatctgattttatcgaagaaaacgatgctatttttggtaagaaagtagtt
gaaaatgctggagaatcttctaaattaaaagaaggacaaattataacgtcgttcgaatta
agagatgaaaattctttattacgtcgtgaagataaagctttagttgaagctcgtgatgcg
agaccagcaacagcaacaccaatactacaaggtattacacgtgcatctttacagactaag
tcgtttatttctgcagcatcgttccaagaaacaacaaaagttcttaacgaagcagctgta
gcaggtaaagttgattctttagaaggcttaaaagaaaatgtaattgtaggacatagaatt
ccagctggtactggtatgcgttcttacgaaaacataattgtagggtctaaagaagagttt
gatcaaatgatgcaagctaaacaagaagtaaattataattag
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