Lacinutrix sp. 5H-3-7-4: Lacal_1897
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Entry
Lacal_1897 CDS
T01533
Name
(GenBank) topoisomerase IB-like protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lan03032
]
Lacal_1897
03400 DNA repair and recombination proteins [BR:
lan03400
]
Lacal_1897
Enzymes [BR:
lan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Lacal_1897
DNA replication proteins [BR:
lan03032
]
Prokaryotic type
DNA Topoisomerases
Lacal_1897
DNA repair and recombination proteins [BR:
lan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Lacal_1897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
AFF4_CHD
Motif
Other DBs
NCBI-ProteinID:
AEH01743
UniProt:
F6GEM4
LinkDB
All DBs
Position
2145060..2146163
Genome browser
AA seq
367 aa
AA seq
DB search
MATKLNSDTFLKQLWHEPELAIEKLNLVYASENELKIKRKRNKKSFIYEFEGKPINDKKE
LNRINSLVIPPAWEKVNISYLENTHLQATGRDAKYRKQYRYHPTWNKIRNQTKFYRMRFF
AQSLPLIREQIDLDLNQNGWPKTKTLALVIRLMEETHIRIGNSQYAKRNKTYGLSTLRTK
HVNVNKDAIRFEFIGKKGKEHSISIRNKKLIYLVNKCQELPGWELFKYFDENGDKHTIYS
SMVNEYIYSLCEQHFTAKDFRTWAASVVFLDTIYDLGLTEDDKIKDKNIIKGLDASAKAL
GNTRNVCRKYYVHPVLIESYKNNSIANAFSIIETNTKPQPNRTKTEEALLFLLKKFKPEF
VYNTNSQ
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggcaactaaattaaatagcgatacttttttaaagcaattatggcatgagccagaatta
gctatagaaaaattaaacttagtttatgcaagcgaaaacgaacttaaaattaaaagaaaa
agaaataaaaaatcttttatttacgagtttgaaggaaaacctataaatgataaaaaagaa
ttaaatcgcattaatagcttagtaataccgccagcttgggaaaaagttaatatatcgtat
ttagagaatacacatttgcaagcaacaggtagagatgccaagtatagaaaacaataccgt
tatcatccaacgtggaataaaattagaaaccaaaccaaattttatcgtatgcgttttttt
gcacaatctctacccttaattagagagcaaatagatctagatttaaaccaaaacggttgg
cctaaaacaaaaactttagcgctagttattagattaatggaagaaacccatattagaatt
ggtaattctcaatatgcaaaaagaaataaaacctatgggttgtccacactacgtactaag
catgtaaatgtaaataaagatgcaataagatttgagtttatagggaaaaaaggaaaagaa
cattctataagtattcgtaataaaaaattaatttatttagtaaataaatgtcaagaatta
ccgggatgggaactctttaagtattttgatgaaaatggtgataagcatactatatatagt
agtatggtaaacgaatatatttattctttatgtgaacagcattttacagcgaaagacttt
agaacttgggcagcatcggtagtatttttagatactatatatgatttgggtttaactgaa
gatgataaaattaaagataaaaacattattaaaggtttagatgcttcagcaaaagcatta
ggtaatacaagaaatgtatgtagaaaatactatgtgcatcccgttttaattgaaagctat
aaaaataactctattgcaaatgcttttagtattatagaaactaatacaaagccacaacct
aacagaacaaaaactgaagaagctttgctttttttactcaaaaaatttaaaccagaattt
gtatataatactaatagtcaatag
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