Lupinus angustifolius (narrow-leaved blue lupine): 109325661
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Entry
109325661 CDS
T04664
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109325661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109325661
03012 Translation factors [BR:
lang03012
]
109325661
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109325661
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109325661
Translation factors [BR:
lang03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109325661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
AAA_16
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109325661
NCBI-ProteinID:
XP_019413693
LinkDB
All DBs
Position
LG13:complement(5779323..5798265)
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AA seq
1124 aa
AA seq
DB search
MHKPMHAASFLISRFNSLHYRYVKPLIPTRLFSRYSLEQFSDDDYDCDFETHQASSTVAN
VDEWKWKLSMLLRSEKDQEIVSRDKKDRRDYEQIANLAKRMGLYSEVFGKVIVASKVPLP
NYRPDLDDKRPQREVVVPLSLQRRVEGLLQEYLDRLQLNSEKTTENVDDFKSINEVKNVD
MDENADSYVDGSVMEKVLQKKSLRMRNMQRAWQESPEGRKMLEFRRSLPSFKEKEGLLQA
IARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVSERVSAE
RGEALGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMN
EDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFASAPTFHIPGFTYPVRAHFLEDVL
EVTGYKLTSFNQVDDYGQEKLWKTQKQLAPRKRKNQITALVEDALSKSSFESYSSKARDS
LASWSPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRIL
LLTCHGSMATSEQKLIFERPPPNVRKVILATNMAEASITINDIVFVIDCGKAKETTYDAL
NNTPCLLPSWISKASARQRRGRAGRVQPGESYHLYPKCVYEAFSEYQLPELLRTPLNSLC
LQIKSLQVESIGEFLSAALQAPERRAVQNAIDFLKLIGALDEKENLTNLGKLLSMLPVDP
KLGKMLIMGAIFRCFDPVLTVVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALV
RAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILRDAGLVESDASINNKLS
HNQSLVRAVICAGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFG
EKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLRMLDGYVDFFMDPNLADCYLKLK
EELDKLLQKKLEDPSIDIHKEGKYLMLAVQELVLGDQCEGRFVFGRESRKPRASNDENKF
TKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPRRNKQLSERD
AAIEALAWLTHTSENNQHEDDKSPPDVTNNMLKLLGKRRKSKRR
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcataaaccaatgcatgcggcgtcgtttttaatatcacgcttcaactcccttcactac
cgttatgtcaagcctctcatacccacgcgccttttctctcgctattcccttgaacagttc
tctgatgatgactatgattgtgattttgagacccatcaggcgtcgtctacggtggccaat
gtagatgagtggaaatggaagctcagcatgctgctacgtagcgagaaggaccaggagatt
gtatctagagacaaaaaagataggagagactatgaacagatagctaaccttgccaaaaga
atgggactttacagtgaggtgtttggaaaagtgattgttgcaagtaaggtgcctcttcct
aactaccggccagatttggatgacaaacgtccacaaagagaggtggtggttccactaagc
ttgcaaaggagggttgagggtttgttgcaggaataccttgacagacttcagttaaattct
gaaaagacaactgagaatgtggatgatttcaagtccatcaatgaggttaaaaatgtggat
atggatgaaaatgctgattcttatgtggatggttctgttatggaaaaggttctccagaag
aagagtttgaggatgcgcaatatgcaaagagcttggcaggaatcacctgagggcaggaag
atgctggagttccggaggtctcttccatcattcaaggagaaggaaggtttacttcaagct
atagctcggaatcaggtgatagtaatatctggagagactggctgtggtaaaaccactcaa
cttcctcaatatgtattagagtcagaaatagagtctggccgtggagcattttgcagcatt
atttgcacacagcctcgaaggatatcggcaatggcagtgtcagagagagtgtcagctgag
agaggagaggctcttggtgaaacagttggtttcaaagttcgattagaaggaatgaaaggg
aaaaacacccatctgctgttttgtaccagtggtatattacttcgaaggttgctgagtgat
cgaaacctgaatggtataacccatgtttttgttgatgaaattcacgagcgaggcatgaat
gaagactttttactgattgtgttaaaggatcttcttccacgtcgtcgggatttaagattg
gttttaatgagtgccaccttgaatgctgagcttttttctaattattttgcaagtgcacca
acatttcatatcccgggtttcacctaccctgtaagagctcactttttagaagatgttctg
gaagtgactggatataagttgacttccttcaaccaagttgatgattatggtcaagagaaa
ttgtggaaaacgcaaaaacagctagcaccgcggaaaagaaaaaatcagatcactgcactt
gttgaggatgctctttctaaatcgagctttgagagctatagttccaaggcacgtgactcg
ctagcatcatggtcacctgactgcataggttttaatctcattgaggctgttctatgccat
atatgtcggaaggaacgaccaggtgctgtcttggtatttatgactgggtgggaggatata
agctgcttaagagatcagcttaaatcacatcctctcttaggagatccaaataggattctg
cttctaacatgtcatggttcaatggctacttcagaacagaaactcatatttgagaggcca
cctcctaatgtaaggaaagtaatacttgccacaaatatggcagaggcaagtattacaatc
aatgacatagtttttgtaattgactgcggaaaagcaaaagagaccacgtatgatgctttg
aataacacgccatgtctactcccttcttggatttcaaaggcatctgctcggcagagaagg
ggtagggctggtcgtgtgcagccaggagaatcctaccacctttaccccaaatgtgtttat
gaagccttttctgaatatcaacttcctgagctactgagaacacccttgaactctctttgc
ttgcaaattaaaagtttgcaggttgagagcataggagagttcttatcagcagctttgcag
gcaccagagcgacgagctgtccaaaatgctattgattttctcaagttgattggagcacta
gatgagaaagaaaatcttaccaatcttgggaagttgctctcgatgcttccggttgatccc
aaactgggaaaaatgttaataatgggagctatatttcgttgctttgatcctgttcttaca
gtagtcgctggcctcagtgtcagggatccttttcttttgccccaagacaagagagattta
gcagggactgcaaagtctaggttttctgctaaagattacagtgatcatatggctcttgtt
cgtgcatatgaaggatggaaagatgcagaaagagaaggatctgcttacgaatactgctgg
agaaacttcctctctgcccaaactcttcaggctatccattcacttcggaagcagtttagc
tttatcctgagagacgccggtttggtagaatctgatgcaagcattaacaataaattgagt
cacaatcagtctctagttcgtgcagtcatttgtgctggactttttcctggcatagcatca
gttgtgcacagggagacatccatgtcatttaaaacaatggacgacggccaggttttatta
tatgcaaattcagtgaatgcacgttaccagaccattccttacccatggctagtttttggt
gaaaaagtgaaggtcaacgctgttttcatccgtgattccactggtgtatctgattcaata
cttatcctttttggtggtgctctaagtaatgggatacaggctgggcatctgagaatgtta
gatgggtatgttgacttcttcatggatcccaatttagctgactgttatttgaagcttaag
gaagagcttgataagcttctccaaaagaagctagaagatcctagcatcgacattcacaag
gaagggaagtacttgatgcttgctgttcaggaactagtcttaggggatcaatgtgaggga
agattcgtatttggccgagaaagccggaagcctagggcctccaatgatgagaataaattc
acaaaagatgggacaaaccccaaaagcttgcttcaaacactgttgatgagagcagggcac
tcccctcctaaatacaaaacaaaacatctcaagacaaacgagtttcgggcactggtcgag
tttaaaggaatgcagtttgttggtaagcccaggagaaacaagcaactttcagaaagggat
gctgctatagaggcattggcttggttgactcacacctctgaaaataatcagcatgaagat
gataagtctcctcccgatgtcactaacaacatgctaaagctgctaggaaaacgcagaaaa
tcaaagcgacggtaa
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