Lupinus angustifolius (narrow-leaved blue lupine): 109326956
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Entry
109326956 CDS
T04664
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109326956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109326956
03041 Spliceosome [BR:
lang03041
]
109326956
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109326956
Spliceosome [BR:
lang03041
]
Complex B
Other components
Prp19-related factors
109326956
Complex C
109326956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
DUF2098
Motif
Other DBs
NCBI-GeneID:
109326956
NCBI-ProteinID:
XP_019415448
UniProt:
A0A1J7H8E4
LinkDB
All DBs
Position
LG14:12098201..12103555
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AA seq
913 aa
AA seq
DB search
MSISQDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARSESPFKKRFVIYERALKALPGSY
KLWHAYLRERLDIVRNLPITHSHYDTLNNTFERALVTMHKMPRIWIMYLKTLTEQNLVMR
TRRAFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSSLWQEAAERLASVLNDDRFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGICTVITVRDFSVIFDSYSQFEESML
AYKMEEIGLSDEEEEEEENGVKEEDDEEDIRFKERSWEDEFEKKILHGFWLNEKNDIDLR
LARLDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFDGNPAKQILTYTEAVRTIDPMKA
VGKPHTLWVAFAKLYEHHHDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELKHSNFQ
GALELMRRATAEPSVEVKRKVTADGNEPVQMKLHRSLRLWTFYVDLEESLGTLESTRAVY
ERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKR
YGKTKLERARELFENAVETTPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNE
KLSMYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARG
IYVFASQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLM
QKDQTVNLDEAKDKMKEAGVPEDEMAALERQLAPAVNSSLTKDRKVGFVSAGVESQSDGG
IKTSGNHEDIELPEESDSDDDDDKIEIAQKDVPDAVFGDLIRKREESENNGEVDGANETK
LGALERIKRMKRN
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttcacaggacctatacccttcccaagacgaccttctctacgaagaagaactt
ctccgaaaccccttcagcctcaaactgtggtggcgctacctcattgctcgttctgaatcc
ccattcaaaaagcgcttcgtgatttacgaacgtgccctcaaggctctccccggaagctac
aaactttggcatgcttaccttcgcgaacgcctcgatatcgttcgaaaccttccaattact
cactctcattacgatactctcaataacacgttcgaacgcgcccttgtcacgatgcacaag
atgcccaggatttggattatgtacctcaaaaccctaacagagcagaatttggtaatgaga
actaggagggcgtttgatagggcgctctgcgcgctcccggtcacgcagcatgatcgaatt
tgggagccttatcttgtttttgtgagccagaagggtatccctattgagacctcgttgagg
gtttatagaaggtacttgaagtatgatccttctcacattgaggattttatagagtttttg
gttaattcgagtttgtggcaagaggctgctgagagattagcgtctgttttgaatgatgat
cggttttattcgattaaggggaagacgaagcataggctgtggttagaattgtgtgacttg
ttgacgaggcatgcgaatgaggtgtctgggttgaatgtggatgccatcattaggggtggg
ataaggaagttcacggatgaggttggtcggttgtggacttcactggctgagtattatatc
aggaggggtttgcatgagaaggcgagggatgtctttgaggagggtatttgcactgtcatc
accgtgagggattttagcgttatctttgactcttactcgcagtttgaagagagcatgctt
gcttataagatggaggagattggtttaagcgatgaggaggaggaagaagaagagaatggt
gttaaggaggaggatgatgaagaagatattcgttttaaagaaagatcatgggaggatgag
tttgagaagaagattttacatgggttttggttgaatgagaaaaatgacatagacttgaga
ttggctcggttggattatcttatggagaggaggccagagctggccaatagcgtgcttttg
cgccaaaatcctcataacgtagaacagtggcaccgtagggtgaagcttttcgatggtaat
cctgccaagcagatcctgacttacacggaagcagtaaggacgattgatcccatgaaggca
gtgggaaagcctcatactttgtgggttgcctttgctaaactgtatgagcatcaccatgat
cttgtgaatgcccgggtcatatttgacaaggcagttcaagtgaactacaaaactgtggat
aatctggctagtatctggtgtgagtgggcagaaatggagctgaaacattcgaatttccaa
ggagcacttgagcttatgaggcgggctacagcagagccatcagttgaggtcaagcgaaaa
gtcactgctgatgggaatgaaccagttcagatgaagttgcatagatctttgagattgtgg
accttctatgttgatttggaggaaagcctaggtactttggagtctactcgagctgtttat
gagcggatattggatttacgaatagccacaccacagataattatcaactatgcatacttt
ctggaggagcataaatactttgaagatgcttttaaagtttatgaaagaggagtgaagata
ttcaagtacccccatgttaaagacatatgggtgacatacctgtctaaatttgtgaagaga
tatggaaagacaaaattggagagagcaagagagctctttgagaatgcagttgaaacgacg
ccagctgatcaagtgaaaccactttatctccaatatgctaagttggaggaggactatgga
ctagcaaagcgagctatgaaggtttatgatcaagcaactaaggcagttcctaacaatgag
aagttaagcatgtatgaaatatatattgctcgcgcagctgagatatttggtgttcccaga
actcgagagatctatgagcaggcaattgaatctggtcttccagacaaggatgtcaaaact
atgtgtttgaagtacgctgagctagaaaaaagcttgggagaaattgaccgtgcccgtgga
atatatgtttttgcctctcagtttgcagatccacggtctgatccagatttttggaacaag
tggcatgagtttgaggttcagcacggaaacgaagataccttcagagaaatgcttcgtatt
aagcgaagtgtctctgcaagctacagccagacacattttattctgcccgagtatctgatg
caaaaggaccaaactgtgaatctggatgaggccaaagacaaaatgaaagaggctggggtc
cctgaggatgaaatggctgctctggaaaggcaattagccccagcagttaacagttcattg
acaaaagatagaaaggttggttttgtgagcgccggagtggaatcacagtccgatggaggg
ataaaaacaagcggaaatcatgaggatatcgaattaccagaagaaagtgactctgacgac
gacgatgataagattgagattgcacaaaaagatgtccctgatgctgtttttggtgatttg
attaggaagagagaggagagtgaaaacaatggggaagtggatggtgctaatgagactaag
cttggtgctcttgagagaataaagaggatgaaacgaaattaa
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