Lupinus angustifolius (narrow-leaved blue lupine): 109327810
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Entry
109327810 CDS
T04664
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109327810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lang03041
]
109327810
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109327810
Spliceosome [BR:
lang03041
]
Complex C
Other components
Step II factors
109327810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_22
AAA_19
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
KH_SLS1_1
zf-RING_2
ResIII
ABC_tran
AAA_29
Helicase_RecD
Val_tRNA-synt_C
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
109327810
NCBI-ProteinID:
XP_019416522
UniProt:
A0A1J7H577
LinkDB
All DBs
Position
LG15:complement(337794..344895)
Genome browser
AA seq
1749 aa
AA seq
DB search
MKKFNSHNATNTTRHHHNSQLQPPPPPPPSPHGGNYSRPTRHSFYHWKPGVHPPGNNSTV
RRPNFVITLLPGRRSFRRYDVAAVISECNSKPENTSFSGGDRVTAVLRFRQWCDALDAVG
WFWQSRLKEIHDLTPELTSSVFARSHMHELERRLKNLFSYHVKCLMEGKEVKRLSVEMER
LSKEIESVSKMLSKPLPIPVYNQRKEKKKGFETEKKLIERRVREFKNAMECLVKKFEEEE
EEEEENSEVEDEESVASVFKFEGRLDWVKVHCMIMRERRRLEEGLPIYAYRTDIIQNVHS
QQITVLIGETGSGKSTQLVQFLADSGIGANESIVCTQPRKIAAKSVSQRVQEESSGCYGD
NSIVCYSTFSSSHRFDSRITFMTDNCLLQHYMSDKNLLGVSCIIIDEAHERSLNTDLLLA
LIKNLLSRRVDMRLVIMSATADAKQLSDYFYGCGILHVLGRNFPVDVRYVPSDNMGHAGS
AVIASYVSDTVRIATEIHKTEKEGSILAFLTSQLEVEWACENFRDPSAVSLPLHGKLSSE
EQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSRFDPSSGMNVLKVCPIS
QSSALQRAGRAGRTEPGWCYRLYSEADYQSMEPTQEPEIRRVHLGVAVLRILALGVKNVQ
EFDFVDAPSFSSIEMAIKNLIQLGVIRLNKNVHELTHEGTYLVRMGVEPRLGKLILGCSR
HGLGREGVVLAALMANSSTIFCRVGNEDDKKRSDCYKVQFCHCDGDLFTLLSVYKEWEAL
PREGRNKWCWENSINAKSMRRCQDTIMELESCLERELCLVTPSYWHWNPSKPSDYDKYLK
MVILSSHAENVAMYSGCDQLGYEVAKTGQLVQLHPSCSLRVFAHKPTWVVFGELLSVSNQ
YLVCVTAFDFDSLYNLSPPPQFDVSKMEKRKLQMKRLTGLGSILLKKFRGKGNSRMIDLV
SRIRKACMDERIFIEVNAGQNDIQIYATLHDMETALGFLNDVLEYEKKWLHTECVEKCLY
HGVSPSVALFGSGAEIKHLELEKRFLSIDVCHPNINAIDDKELLMFFDENTSGGICAVQK
FTGMVKDVEESEKWGKITFLSPDAAERAADLDGEEFCGSPLKVVPSQTAVGRDKTFLFPA
VKAKIIWPRRPSKGFGIVKCDINDVNFMLGDFFNLAVGGRYIRCEVSTKHADCIAIGGID
KELSQNEVLDELRAATSRRILDFFLVRGDGIGNPPCSVLEEALLKEISPLMPKISPHISS
CRVQVFPPEPRDIFMKAFITFDGRLHLEAAKALEQIEGKVLPGCFSWQKIMCERMFHSSL
VFPVPVYSVIKKELEEVLARFNDVKGLELIQDRFPNGSFRVRITGNATKTVADVRRPLEE
LLRGKTIENDNLTPIVVQSMLTRDGFNLKNSLQEETGTYIFLDKHNLSIRVFGPPDKVTF
AQQKLIQLLLSLHERKQLEIHLIGRDLPPDLMKQVVKNFGPDLHGLEEKVPGADPILDTR
RQIIFLRGNKELKPRVQEIIFEIARSCHSLVQRLYTGPTCPICLCEVEDGVRLEGCGHLF
CQSCLVEQCESAIRNQGSFPICCAHSGCGHPFLIADLRSLLSYVKLEELFNASLGAFVAS
SGGIFRFCPSPDCPSIYRVADPDEPGEPFACGVCYSETCTRCHLEYHPYVSCDKYGEFKK
DPDSSLKEWCKGKEHVKCCPVCGFTIEKVDGCNHIECKCGKHVCWVCLEFFGCSEDCYSH
LRNIHMAYM
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatttaactcacacaacgccactaacaccacgcgccaccatcacaattcccaa
cttcaaccaccaccaccaccaccaccatcacctcacggtggtaactactcccgtcctact
cgtcattccttttaccactggaagcctggtgtccaccctcccggcaacaattccaccgtt
cgccgccctaatttcgtcatcacgctactccccggccgccgctccttccggcgatatgac
gtggcggcggttatctctgaatgcaactccaagccggagaatacgtcgttctccggcggt
gatcgcgtcaccgccgtgcttcgtttccggcagtggtgcgacgcgctcgacgccgtgggt
tggttctggcagagtaggttgaaggaaattcacgatttgacgccggagcttacgtcctcc
gtttttgcacgttcgcacatgcacgaactcgaacgtcgattgaaaaacctattttcgtac
catgtgaagtgtttgatggaagggaaagaagtgaaacgattgagcgttgaaatggaacgg
ttatcgaaggagattgagagtgtttcgaagatgctgagtaagccgttgccgattccggtt
tataatcagagaaaggagaagaagaaagggtttgaaactgagaagaaactgattgagagg
agagtaagggaatttaagaatgcaatggagtgtttagtgaagaaatttgaagaagaggag
gaggaggaagaggagaatagtgaggttgaggatgaggaaagtgttgcttctgtgtttaag
tttgaaggaagattggattgggtgaaggttcattgcatgatcatgagagaaaggcgcaga
cttgaagaagggttgccaatttatgcttataggactgatattattcagaatgttcattct
cagcagataactgtattaatcggagagactggttctggaaagagtacacagctggtacag
tttctagctgattcaggtattggtgctaatgagtccattgtatgcacccaacctcgtaaa
attgcagctaaatcggtgtctcaaagggtccaggaagaaagcagtggatgttacggagac
aattcaatcgtgtgttattctacattttcatcctcacaccggtttgattccagaattaca
ttcatgacagacaactgtttattgcagcactacatgagtgacaagaatcttcttggggtc
tcatgcatcataattgacgaggctcatgaaaggagcttaaatactgatttactgttggca
ttgatcaagaatttactctctcggagggttgacatgcggcttgtcattatgtctgctacg
gccgatgcaaaacagctatctgattatttctatggatgtggaattcttcacgtgcttggg
agaaactttccggtggatgtgagatatgttccttctgacaacatgggacatgctggttct
gctgttattgcctcgtatgtttctgatactgtcagaatagcaactgaaattcataaaaca
gaaaaagagggatctatccttgcctttctgacctcccagctagaagtagagtgggcttgt
gaaaattttagagatccctctgcagtttctttgcccttacatggaaaactttcatccgaa
gagcaatttcatgttttccagaactaccctggaaaaagaaaagtgatatttgcaacaaat
cttgcagagacatcacttacaattcctggtgttaagtatgtgatagattctggttttgtt
aaagacagtcgatttgaccctagcagtgggatgaatgtacttaaggtttgcccgatcagc
cagagttctgctcttcaacgggctggccgtgctgggagaactgagcctggttggtgctat
agactgtactcggaagctgattatcagtctatggaaccaactcaagaaccagagattcgg
cgagttcatcttggtgtagcagttttgaggatccttgctttaggagtgaagaatgtgcag
gaatttgattttgtggatgctccaagttttagttctattgagatggcaatcaagaaccta
attcaactaggagtcattagactgaacaaaaatgttcatgaattaacacatgaaggcaca
tacttggtaagaatgggggtcgaacctaggcttggtaaactcattcttggctgttcccgt
catggtttgggtagagaaggtgttgtccttgctgctttgatggccaattccagcaccata
ttttgcagagttggtaatgaagacgataagaaaagatccgattgttataaagttcaattt
tgccattgtgatggtgacctctttactctactctcagtgtacaaggaatgggaagctttg
cctcgagaagggaggaacaaatggtgctgggaaaacagcatcaatgccaaatcaatgagg
agatgccaagacaccatcatggagctagaatcttgtcttgagcgtgaactttgccttgtt
actccaagttactggcattggaacccttctaagccctctgattatgataagtatctgaaa
atggttatactttcttcacatgctgagaatgtagccatgtactctggatgcgatcaactc
ggttatgaagtggcaaaaactgggcaacttgttcaactacacccatcttgttcattgcgt
gtatttgctcacaaacctacttgggtggtttttggtgaacttctttcagtttctaatcaa
tatctggtctgtgtaactgcttttgactttgattcactgtacaacctctcccctcctccc
caatttgatgtatccaagatggaaaagcggaagttacagatgaagaggctgactggttta
ggatctattcttctcaagaaatttcgtgggaaaggcaacagtagaatgattgatctggta
tctcggatacgaaaagcttgtatggatgagcgtatcttcattgaagtcaacgctggccag
aatgacattcagatatatgctactttgcatgatatggaaactgcccttgggtttcttaat
gatgttttagaatatgagaaaaagtggcttcatactgaatgtgtggaaaaatgtttgtat
catggtgtctcaccttctgtagctttgtttgggtccggggctgagataaagcatttggaa
cttgagaagcgtttcttgagtattgatgtctgtcacccaaacataaatgcaattgatgac
aaggagctcttgatgttttttgacgagaacacctctggtggtatctgtgctgtacaaaag
ttcacaggcatggtgaaggatgttgaagagagtgaaaagtggggcaagataacatttctc
tcccctgatgctgccgaaagagctgctgatctagatggagaggagttttgtggttccccc
ttgaaagttgttccttcacaaactgctgtgggacgagataaaacatttttatttcctgct
gttaaagcaaaaattatttggcctcgcaggcctagcaaggggtttggcattgttaaatgt
gacataaatgatgtcaatttcatgttgggagatttctttaaccttgcggtaggagggagg
tatattcgatgtgaagttagcacaaagcatgcggattgtattgcaataggtgggattgac
aaagagctctcacaaaatgaagttttagatgaattaagagctgcaacaagtagaaggatt
ctagattttttcttggtcagaggagatggcattggaaatccaccatgcagtgtcttggaa
gaggcacttctaaaagaaatttcccccttaatgcccaaaataagcccacacattagctct
tgcagagttcaggtgttcccacctgagccaagggatatattcatgaaggctttcatcact
tttgatggaagattacatctagaggcagcaaaagctttggagcaaattgaagggaaagtg
ttgccgggatgtttttcatggcagaagataatgtgtgaacgaatgttccatagctccttg
gtatttcctgtaccagtgtatagcgtgattaagaaagaactggaggaagtacttgcaagg
ttcaatgatgtgaagggtcttgagcttatccaagacagatttcctaatggttctttccga
gtgagaataacaggcaatgccacaaagacagtggcagacgttagaagaccgctggaagaa
ctattaagagggaaaaccattgaaaatgacaacctcaccccgatagttgtacagagcatg
ttgaccagagatggctttaatcttaaaaactcattacaggaagagacaggaacttacatt
tttcttgacaagcacaacctgagtatccgggtttttggtccccctgacaaggtcactttt
gctcagcagaagctgattcaattgctgctctctctccatgaaaggaagcagctagaaatc
catctgatagggagagatctacctcctgatctaatgaagcaagtggttaagaattttggg
ccagatctccatggactagaagagaaggtacctggggcagatcctatactcgacactcgc
cgtcagattatctttcttcgtggcaacaaggagctgaaaccaagagtgcaggaaataatt
ttcgagattgcacgttcatgtcattctttggttcagagactttacactggacctacttgc
ccaatttgcttgtgcgaggtcgaagatggagtgcggcttgaaggctgtggtcatttgttc
tgccagtcgtgtctggtggagcaatgtgaatctgctatacgaaaccaaggtagtttcccg
atatgttgtgctcacagtggctgtggacatccctttctgattgcagatttgagatccctc
ttatcatatgttaagttggaggaacttttcaacgcttctttgggagcttttgtggcctca
agtgggggaattttcaggttttgcccatctcctgactgcccatcaatttatcgtgttgct
gatcccgacgaacctggtgagccatttgcttgtggagtatgttactcagagacttgtacc
agatgccacttagagtatcatccatatgtttcatgcgataaatatggagagttcaagaaa
gatcccgactcgtctttgaaggagtggtgcaaggggaaagaacatgtcaagtgttgccct
gtgtgtgggtttacaattgagaaagtggatggctgcaaccacattgagtgcaagtgtgga
aaacatgtatgctgggtttgtttggagttttttggatgcagtgaggattgttatagccat
ttgagaaacatacacatggcttacatgtaa
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integrated database retrieval system
