Lupinus angustifolius (narrow-leaved blue lupine): 109329948
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Entry
109329948 CDS
T04664
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109329948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lang03021
]
109329948
03019 Messenger RNA biogenesis [BR:
lang03019
]
109329948
Transcription machinery [BR:
lang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109329948
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109329948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
VHS
Motif
Other DBs
NCBI-GeneID:
109329948
NCBI-ProteinID:
XP_019419415
UniProt:
A0A4P1RS93
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All DBs
Position
LG02:584007..589007
Genome browser
AA seq
888 aa
AA seq
DB search
MTITTMTEVVSKPPSFLVSEFNSLLTDRVLHAPPSHEEQIVSHIYDSLLSQLTSNFKHVI
IDLTVIAQQQKKHANIIANTICSRILKVPADQKLPTLYLLDSIVKNFGQQYVRYFSLRLS
EVFCEVYRHVQPNMHSAMRYLFGTWSKVFPPSVLCKIESQLQFSDAVNNSQSSSINPLMA
SESTRATHGIHANPKYLRQMERSSAIMDTVGGERLESAGTLGNINKSHSVVDKGVAKAPG
REEELSEWQRKQYSVHGRKRLRTSMTYSDSLNNGQQHPSPKSLIDAYGTDKRQETSGNKA
LSIEWLDRNGVDNKVLATSWQNTQEEEFNWEEMSPTLVDRRRNNAFFKERPFIVATNANS
SEQDTKKSLSSGSQHPAVDDSSVVAEHALSSSAYGCVSHGQMSGLQNQINQTLGSSQHFD
AWKIGNHPSNSSQHLFNSRGSEMSLLKPPIGNIPNTHVNPYGSRPTMPSIVPGLKYNVEA
RPPAFPASFEMSNSVNEHATGPPRLNHIFPLQNHVRSQFAVNANNTIVSHDPHKSLFTHK
QPSDSVDNKNISKGQHHQFPNQLPGLVSSNQQNHGQAPQLQFLSSQASAASQFSHGGTLQ
GHGAPISASVSNPLPTMKFPLPGQYITNNSLHLQGGALPRLPPSRPPAPSQIPHPNASPF
VSSQQPTPAYSNLISSLMAQGLISMTNEPTRQDSVGTKFDPDILKVRHEVAISDLYDNLP
RQCKTCGLRFKCQDDHRSHMDWHVTKNRMSKNRKQNPSRKWFVSRRMWLSGAEAMGKESV
PGFSPTETSVEEKKDDEELAVLAEEDQNTCALCEEPFEKFYSDETEDWMYREAVYLNAPK
GTTEGMERSQLGPIIHAKCKSEASMSTSLEGVCVSHSIFLLPNSSKSV
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaccataacgacgatgaccgaggtcgtttcaaagccaccttcattcctcgtctctgaa
ttcaactctcttctcaccgaccgtgttcttcacgcgccgccttctcatgaagaacaaatc
gtttctcacatttacgattccttattatctcaactaacctccaattttaaacacgttatc
atcgatctcactgtaatcgctcaacaacaaaagaaacacgctaacatcattgctaatact
atttgctctcgtattcttaaggtgcctgcagatcaaaagctccctacactttatcttttg
gatagtattgtaaaaaacttcggccagcaatatgtcagatacttctctttacgtctatcc
gaagttttctgcgaggtgtacaggcacgttcagcctaatatgcattctgctatgcgatat
ctctttggtacctggtcaaaagtctttcctccctctgtcctatgcaaaattgaatctcaa
ttgcaattttctgacgcggttaataatagtcaatcatcaagtattaatcctctcatggca
tctgaatctactcgagcgactcatggaatacatgctaacccgaagtacttgcggcagatg
gaacgatctagtgcaattatggatactgttggaggtgaaaggttagagtcagcaggaact
ttaggtaatataaacaaatctcattctgtagtggataagggagtagcaaaagcaccaggt
agagaagaagagctgagtgagtggcagcgaaagcagtattctgtccatggtcggaaaaga
cttcgaacttccatgacatacagtgacagtcttaataatggacaacagcatccaagtcca
aaatctctaattgatgcatatggcactgacaaacgccaagaaacttctggcaataaggct
ttgtcaattgaatggctggatagaaatggtgtagataacaaggttttggcaacctcatgg
cagaatacccaagaggaggagtttaattgggaagagatgagtccaacgctagtagaccgt
agaagaaataatgctttcttcaaggaaagaccttttattgttgcaactaatgcaaattct
tccgagcaagataccaagaagagtttgtccagtgggtctcagcatcctgcagtagatgat
tcctctgttgtagcagaacatgcactttcctcttcagcttatggttgtgtatcccatggt
cagatgtctggactccaaaatcaaataaatcagactctaggctccagtcaacattttgat
gcttggaagattggtaatcatccatctaattcttcacaacacctcttcaatagtagggga
tcggaaatgagtcttctgaagcctcctattggtaacattcccaatactcatgtaaaccca
tacgggtcacgaccgactatgccaagtattgtccctggtttaaagtataatgtggaggct
cgtccaccagcttttccagcgtcttttgaaatgagtaattctgtaaacgagcatgccacg
ggtcctcccagattaaatcatatattcccattgcaaaaccatgttaggagtcaatttgca
gtaaatgctaataacaccatagtgagtcatgatccacataaatcgctgtttacgcacaaa
cagccgtcagacagtgttgataataaaaatatcagtaaaggacagcatcatcagtttcct
aatcagctacctggcctggtttcatctaatcagcaaaaccatggacaagcaccacaatta
cagtttctttcatctcaggcttctgcagcatcacaatttagtcatgggggcactttgcaa
ggacatggtgctcctataagtgcatccgtgtcaaatccgctgcctactatgaaattcccc
ttgccaggccaatatatcacaaataactctttacatttacaagggggagcattgccacgt
ttgcctccaagtcggcctcctgctccgtcacaaatacctcatcctaatgctagtcctttt
gtgtctagtcaacagccaactccggcatattctaatttgattagttcacttatggcccaa
ggtttgatctcaatgactaatgagcccactagacaggattctgttgggaccaaatttgat
ccagatattctgaaggttcgtcatgaagttgctatcagcgacttatatgataatctcccc
agacaatgcaaaacttgtggcctccgcttcaaatgccaagatgaccacagaagtcatatg
gattggcacgttactaagaaccggatgtctaaaaatcgaaagcagaatccctctcgtaag
tggtttgtgagcagaaggatgtggctcagtggtgcagaggcaatgggaaaagaatcagtt
ccaggtttttccccaactgagacgagcgtcgaggaaaagaaagatgatgaagagttggct
gtgctggccgaagaggaccaaaatacatgtgcattatgtgaagagccttttgagaagttt
tatagtgatgaaacagaagattggatgtatagagaagctgtataccttaatgcacctaag
ggtacaacagaaggaatggaaaggtcacagttaggccccattattcatgctaaatgcaaa
tctgaggctagcatgtccacttctttagaaggggtatgtgtttctcattctatatttctc
ttgccaaattcatctaaaagtgtatag
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