Lupinus angustifolius (narrow-leaved blue lupine): 109333101
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Entry
109333101 CDS
T04664
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109333101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109333101
03041 Spliceosome [BR:
lang03041
]
109333101
03009 Ribosome biogenesis [BR:
lang03009
]
109333101
03016 Transfer RNA biogenesis [BR:
lang03016
]
109333101
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109333101
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109333101
Spliceosome [BR:
lang03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109333101
Complex C
U4/U6.U5 tri-SnRNP related factors
109333101
Ribosome biogenesis [BR:
lang03009
]
Eukaryotic type
Pre-60S particles
Helicases
109333101
Transfer RNA biogenesis [BR:
lang03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109333101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
DUF7579
Motif
Other DBs
NCBI-GeneID:
109333101
NCBI-ProteinID:
XP_019423923
UniProt:
A0A4P1QS81
LinkDB
All DBs
Position
LG18:complement(1242006..1250868)
Genome browser
AA seq
983 aa
AA seq
DB search
MNSEMENTESSIIAKRKEPEPEPESNSPINPKRPRTSSQSRTCVHEVAVPSGYLPNKDEP
LHGTLSNPLYNGPMAKSYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMS
FRDKQRVIYTSPLKALSNQKYRELSGEFNDVGLMTGDVTISPNATCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICN
IHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFREDNFLKMEDTFAKKKLEGN
KGFKSNGRGGKGGSGGGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNT
QEEKDTVEHIFKNAILCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQE
GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERG
ICIIMVDEQMEMNNLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQ
FQYEKTLPDMGQRVSKLEQEVALLDASGEAEVSEYHKLKLELAQLEKKMMEQIIRPHMIL
SCLVPGRLIRIREGGTDWGWGVVVNVVKKPSSGYIVDTLLHCSHGSNENSTRPKPCPPRP
GEKGEMHVVPVELPLISTLSKLRIFIPPDLRPSEARQNILLAVEELGNRFPEGFPKLNPV
KDMKINDPVIVELVDQIEEVEQKLFSHPMHKHQDMDQIKCFQRKAEVSHEIQQLKTKMRD
SQLQKFREELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLD
HHQVAALASCFIPGDRSSESQIQLRTELARPLQQLQDSARSIAEIQHECKLEINVNEYVE
STVRPFLMDVIYSWSKGASFGDVIQMTDIFEGSIIRSARRLDEFLNQLRAAADAVGEVDL
EKKFAAASESLRRGIMFANSLYL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaactcagaaatggagaacactgaatcttccatcattgcaaaacgaaaggaaccagaa
ccagaaccagaatcaaattctccaataaaccctaagcgacctcgcacaagttctcaatct
cgaacctgcgtccatgaagtcgctgttccgagcggttaccttccaaacaaagacgaacca
ctccatggaactctctcgaaccctctttacaatggtccaatggctaagtcctatcccttc
acactcgacccgttccaacaagtctcggtcgcgtgcctcgaacggaacgagtccgttctc
gtctccgcccacacctccgccggaaaaacagccgtagctgagtacgctatcgcgatgtcg
ttccgcgacaagcagcgcgtgatatacacctctccgcttaaggcgttgagtaaccagaag
taccgtgagcttagtggtgagttcaatgacgttggacttatgactggtgacgtcactatt
tctccgaacgctacgtgtttggttatgactactgagattcttaggggaatgctttataga
ggaagtgaggttttgaaagaagtagcttgggttatttttgatgagattcattatatgaag
gatagggaaagaggtgttgtttgggaagagagtattatttttttgccacctgctattaag
atggttttcctttcggctacgatgtctaatgcaaccgagtttgctgagtggatttgtaat
attcataagcagccttgtcatgttgtgtacaccgattttcggcccacgccactgcagcat
tatgtttttcctattggtgggagtgggttgtatttggtggttgatgagaatgagcagttc
agggaggataattttttgaaaatggaggatacttttgctaagaagaaattggagggtaac
aagggttttaaaagcaatggcagaggcggaaaaggtggctctggaggcggtggttctgat
atatacaagatcgttaagatgattatggaacgcaaattccaacctgttatcatcttcagc
ttcagtcggagagagtgtgaacagcatgcaatgtctatgtccaagcttgacttcaatacc
caagaggaaaaggatacagtggagcatatttttaagaatgcaatactatgtttgaatgaa
gaagacaggagcttacctgctattgagctgatgttgcctctccttcagcgagggattgct
gtccaccattctggccttcttcctgttatcaaagaattagttgagcttcttttccaggaa
ggccttgttaaggccctcttcgctactgagacgtttgcgatgggtttaaatatgccagca
aaaactgttgtattcacagctgttaagaagtgggatggtgacagtcatcgttatattgga
tctggtgaatatatacagatgagcggaagggccgggcgtcgtggcaaggatgagcgtgga
atttgtatcataatggttgatgagcaaatggaaatgaacaaccttaaggacatggttctg
ggtaaacctgctcctttagttagtacattcaggcttagctattattcaattttaaatttg
atgagccgtgcagaaggccagttcactgccgaacacgtaataagaaattcatttcatcaa
tttcaatatgaaaagaccttacctgatatggggcaaagggtgtcaaagctggagcaggaa
gtagctttgctcgatgcttcaggggaggctgaagtatctgaatatcataagctaaaactg
gaactagcgcagcttgagaagaagatgatggaacaaataataagacctcatatgattctt
tcttgccttgttcctggccgattgatcagaataagagaaggtggaactgattggggctgg
ggtgttgttgtcaatgttgttaagaaacctagtagtgggtatatagttgatacattactt
cattgttcacatggttcaaatgaaaatagtacacggccaaaaccttgtccacctcgccct
ggagagaaaggtgaaatgcatgtggtccctgttgaattaccattaatctctacccttagt
aaactgaggatatttatacctcctgatctccggccctcggaagcaaggcaaaacatactg
cttgctgtagaggagctgggcaatcgttttcctgaaggttttccaaagcttaaccctgta
aaggatatgaaaataaatgaccctgtgatcgttgagcttgtcgatcaaatagaggaagtt
gaacaaaaactgttttcccatcctatgcataagcatcaagacatggatcaaattaaatgc
tttcagaggaaagctgaagtgtctcatgaaattcagcaattgaagacaaaaatgcgggat
tcccagctacaaaaatttcgtgaagagctaaagaatcgctcaagagtcttaaagaagctt
ggtcatattgatgctgatggtgtagttcagttgaagggacgggcagcctgcctgattgac
acaggcgatgaactccttgtcactgagttaatgtttaatggtacttttaatgatcttgac
caccatcaagttgctgcgcttgcaagttgttttataccgggtgatagatctagtgagtct
cagatacaactgagaacagaacttgcgagacctctacaacagcttcaagacagtgcaaga
agcatagctgagatacaacatgaatgcaaattggaaataaatgtgaatgagtacgtggag
tcaacagtacggccattcctgatggatgtgatatactcttggtcaaagggagcaagtttt
ggagatgttatacaaatgactgacatctttgaggggagtatcattaggagtgctagaagg
cttgatgagtttttgaatcagttgcgtgctgctgctgatgcagttggggaggttgacctg
gagaagaagtttgcagcagcaagcgaaagccttcggcgaggtattatgtttgcaaattcc
ctgtatctttga
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integrated database retrieval system
