Lupinus angustifolius (narrow-leaved blue lupine): 109334403
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Entry
109334403 CDS
T04664
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109334403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109334403
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109334403
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109334403
mRNA degradation factors
3'-5' decay
Ski complex
109334403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
109334403
NCBI-ProteinID:
XP_019425707
UniProt:
A0A1J7FVB7
LinkDB
All DBs
Position
LG19:complement(10278208..10310818)
Genome browser
AA seq
1336 aa
AA seq
DB search
MDPINATNELSFRVGFSGHSGHLRVEPLSTVERSNPLRSIPDFIPPPAFPKETPESIKKY
IEETYLQPILDPDEFSPENVGRQWEFDWFGRAEVPLEPSQPRTVVVPIWEPPFRRSNNGS
VEGRWEPKFEEVDVSDLTSGAADSGPLPRTSAKDIVRGSINNRPFRPGGLGDSQALERIL
PEGASNGEWVHEILNGGPAQTIPPSLKQGLDLGALKSYSCSWNVYKDANSLKSSPDEKLS
GLSVQFDDLFKKAWEEGVEEQEEDGQLSEVEVVKLEANVDTTEVSGKTRESEMSLDDILL
VGSGGPQLNLEGFSDGVGQQKKAWAMLEGNEGIADHFHELVPDMALEFPFELDAFQKEAI
YYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDV
GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEV
IIMLPKHINIVLLSATVPNTVEFADWIGRTKQKDIRVTGTTKRPVPLEHCLFSAGELYTI
CENETFLPQGLKAAKDASKKRNLTVGGGSGPKPGTSAGYNSAQVQKRENNFRVKQHGGNF
FGTGRGYQNNGNGQSNWRAEASMWLMLINKLSKKSLLPVVIFCFSKNRCDRSADSMTGTD
LTSSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEML
FCRGVIKILFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLD
KIGSVILMCRDELPEESDLKHVTVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSF
AEFHAQKKLPEMQQLLKRKLNQPTKAIECIKGEPTIEEYYDLYSEAETYSNQISEAILQS
PNAQQFLNTGRVIVVKSESDQDHLLAVIVKTPSANNKLYIVFVIKPDMPPPVENASSSNM
QNKNNAFDQGYFVMPKSRRGLGDEYSTSISSRKGRGVINIKLPYRGSACGMGYEVREVNS
KEFLCICSSKLKIDQVGLLEDVSSSVYSKTVQLLLDLKSNGNKYPPALDPIKDLKLRDVE
LVATYRKWTRLLEKMSQNPCHGCIKLEEHLMLAKEIKKHTAEVDDLQFKISDEALQQMPD
FQGRVDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEAVALMS
AFVFQQKNTSEPSLTPKLSEARHRLYKTAIRLGECQVHFHLPINPEEYAQQNLKFGLVEV
VYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNA
IKRDIVFAASLYVTGI
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggatccaattaatgcaacgaacgagctttcattccgggtcgggttttccggccacagc
ggccacctcagggtggagccgctgtccacggtggagcgttcaaaccccttaaggtccatt
cccgatttcattccgccacctgcctttccgaaggagacacctgaatctataaagaagtat
atagaagagacatatctccagccaatattagaccctgatgaattttcaccagaaaatgtt
gggaggcagtgggaatttgactggtttggtagggctgaagttcctctagagccatcacag
ccacgaactgttgtagttccaatttgggaaccaccatttcgacgatcaaacaatggatca
gtggaaggaagatgggaaccaaaatttgaggaggtggatgtatcagatctgacatcagga
gctgcagattctgggccattaccgcgcacttctgctaaggacattgtaaggggaagcatc
aataatcgcccttttcgtccaggcggtttgggagattctcaagctttagaaagaattctt
ccagaaggtgcttctaatggtgaatgggtgcatgaaattttgaatggtggccctgctcaa
acaattcctccaagtttgaagcaaggattggatctcggtgcgctcaagtcatattcatgc
tcatggaatgtttacaaggatgctaattcactcaagagctcaccagatgaaaagttgagt
ggattgtctgtacagtttgatgacttatttaagaaagcttgggaagagggtgtcgaagaa
caggaggaagatggtcaattatcagaagtggaggttgtaaagttggaagctaatgttgat
acgactgaggtatctggcaaaacacgcgagagtgaaatgtcacttgatgatattttgtta
gttggctcaggaggaccacaactgaatttggagggattcagtgatggagttggtcagcag
aaaaaggcttgggctatgcttgaaggcaatgaaggtattgcagatcactttcatgaactt
gttcctgatatggcgcttgaatttcccttcgaattggatgcatttcagaaggaggctatt
tattatcttgaaaagggggaatctgtttttgtggctgctcacacatcagctggaaagaca
gtagttgcagaatatgcatttgctttagcgtcaaaacactgtacaagagctgtgtatact
gctcccataaaaaccatcagcaatcagaagtacagagatttttgtgggaagtttgatgtt
ggccttcttactggtgatgtaagcttgaggccagaagcttcttgtctcatcatgaccaca
gaaattctaagatcgatgctctaccggggtgcagacattattcgtgacattgaatgggtt
atatttgatgaagtgcactatgtcaatgatgctgaaagaggtgtcgtttgggaagaagtg
ataatcatgcttccgaaacacatcaatattgtcctcctttctgccacggtacctaatact
gttgaatttgccgattggattggcagaacaaaacaaaaggacatccgggttacagggaca
acaaaaagacctgttccactggagcactgccttttttctgctggagaactgtacacaatt
tgtgaaaatgaaacatttctgcctcagggattgaaagcagctaaagatgcttcaaaaaaa
aggaatttgactgttggtggtggttctggaccaaagccagggacttcagcaggttataac
agtgctcaagttcaaaaacgtgaaaataactttcgagtgaaacagcatggaggaaatttc
tttggaactggcagaggctatcagaataatggcaatggccaaagcaattggagggcggaa
gcttcaatgtggttgatgcttatcaacaaactctccaaaaagtcattgttgcctgtggtt
atattttgtttttctaagaatcgctgcgatagatcagctgatagtatgactggaactgac
ctcactagtagctcagagaaaagtgagatccgtcttttctgtgacaaagcattttcacgg
ctaaagggatctgaccgaaatttaccacaggttgttcgagttcaaaatcttcttcgtaga
gggattggtgtacatcatgctggtcttcttccaattgtaaaggaagttgttgaaatgcta
ttttgccgtggtgttatcaagatcttgttttcaacggaaacatttgcaatgggagtcaat
gcacctgctagaacggtagtctttgatactctaaggaagtttgatggcaaggaatttagg
cagttactaccaggagaatatactcaaatggcaggtcgtgctggcagaagaggacttgat
aagattggttctgttattttaatgtgccgtgatgaactcccagaagagagcgatttaaag
catgtcactgttggaagtgcaactcgtcttgaatctcaatttcggctaacctatattatg
atcctacatcttcttcgagttgaagaattgaaggttgaggacatgcttaaaagaagtttt
gctgaattccatgctcagaaaaaacttccagaaatgcaacagcttttgaagcgaaagctt
aatcagcctacaaaagcaatcgaatgtatcaagggtgaaccaactattgaagaatactat
gatttgtattcagaggctgagacatacagtaaccagatatcagaggcaattttgcagtcc
cctaatgcccaacaatttcttaatactggaagagttatagtcgtaaagtcagaatcagac
caggatcacttgcttgcagtgattgtgaaaactccttctgcaaataataagttgtacatt
gtgtttgtgataaaacctgacatgccaccccctgtggaaaatgcctcaagtagtaatatg
cagaataaaaacaatgcatttgaccaaggttattttgtcatgccaaaatcaaggcgtggt
cttggggatgaatatagtacatccatttcctctcgcaaaggaagaggtgtcatcaatatc
aaattgccctatcgtggctctgcctgtgggatgggctatgaagtccgagaagttaacagt
aaagagtttctatgcatatgcagtagcaaacttaaaattgaccaagttggacttcttgaa
gatgttagcagttctgtttactcaaagacagttcagctgctcctagatttgaaatcaaat
ggaaataagtatcctccagccctggatcccataaaagatctaaagttgagagatgtggaa
cttgtggcaacataccggaagtggactagattattggagaaaatgtcccagaatccatgt
catggatgtatcaaattggaagagcacctcatgttagcgaaagagataaaaaaacataca
gcagaagtcgatgatcttcagtttaaaatttcagatgaagcacttcaacagatgccagac
tttcagggccgggtagatgttctgaaggaaattgggtgcatcgatgaagatcttgttgtt
caaatgaagggacgtgttgcgtgtgagatgaactctggggaggaattgatatgtacagag
tgcttgtttgagaaccaactggatgaacttgaacccgaagaagctgttgcattaatgtcc
gcttttgtattccagcagaagaacacatctgaaccttcactcacaccaaagctgtctgaa
gcgagacatagattgtacaagacagcaataagacttggggagtgtcaagtccactttcat
ctaccaataaaccctgaggagtatgctcaacaaaatctcaaatttggtcttgttgaagtg
gtttatgaatgggcaaagggtactccatttgctgaaatctgcgagcttacagatgttcct
gaaggcctgatagtaaggaccattgtcaggttggacgagacgtgccgagagtttaaaaat
gctgcagctattatgggtaattctgcgctctgcaaaaaaatggaaattgcttctaatgca
ataaagcgtgacattgtttttgcagctagcttgtatgttactggcatatga
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