Lupinus angustifolius (narrow-leaved blue lupine): 109334413
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Entry
109334413 CDS
T04664
Name
(RefSeq) uncharacterized LOC109334413
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109334413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109334413
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109334413
mRNA degradation factors
5'-3' decay
Decapping complex
109334413
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF3399
Motif
Other DBs
NCBI-GeneID:
109334413
NCBI-ProteinID:
XP_019425720
UniProt:
A0A4P1QQE8
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All DBs
Position
LG19:744827..750533
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AA seq
883 aa
AA seq
DB search
MVDMDNFGAGELPNTEDLIQFGNVPKEGAVFDASQYAFFGKNAAEEVELGGLEEDAYLPA
LESNEEFFLNREEAEDVRSLSDIDDLTTTFLKLNKVVSGPRSPGVIGDRGSRENSISEWE
QRDGVLNWIDQNAYDSEGSLDGKHWSLRPHSSVTNLHDSKSLYRTSSYPEQQMQQQHHHL
QHCASEPVHNWLDQPFYDTETAQDDGKRWSSQSYSSIAHLQESKPLYRTSSYPDKQQELL
RFSSEPILLPKSSFTSYPPPNGRSQQASPSHSTGHLNIPYQDAGAQMELSSQSRSHFSNS
ALQFSGLNHGSHFSRNMRQLSTGSPLNHRMQNQLINQAGLYPGEHPNLLSNMLQQQLNLH
RGPASPHLMSQLQHQQHRLHRPVQQSAGYLSGLQSDLFNPYLSSGPSIISKYEHMHGLPD
VRDHRPKSTQKGKHSLRFSKQGSDASSQKSDSFSLQFRSKHMTSDEIESVLRVQHALTHS
NNLYVDDYYHQACLAKKPSLAKLKNPFCPTQMRDLPSRSRSISEPHAFLQIDALGRVLFS
SIRRPRPLLEVDPPKSSFNGSSEQNISEKPLEQEPMFAARVTIEDALCLLLDVDDIDRFL
EINQLQDGGTQLRRRRQVLLEGLATSLQLVDPLGKNGNKAGLGAKDDLVFVRLVSIPKGR
KLLIKYLQLLLPGSELTRIVCMAIFRHLRFLFGGLPSDSAASEITSNLIKVVCQCIKGLD
LGGLSACLAAVVCSVEQPPLRPLGSTSGDGASIILVSVLERATELLTDPHAASNYNMGNR
SFWQASFDEFFGLLTKYCMNKYHSIMQSLLKQNAIDVDDIGPDAAKAISTEMPVELLRAS
LPHTDDRQRKLLLDFAQRAVPMVGFSSSAGDSSNHMSSETVLS
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggtggatatggataattttggagctggagaacttcccaacacagaggatcttatacaa
tttgggaatgttccaaaagaaggtgcagtttttgatgcatcacaatatgcattcttcggt
aaaaatgccgctgaggaagttgagttgggagggttagaagaagatgcatatttgcctgct
cttgagtctaatgaggagttctttctcaatagagaagaggctgaggatgtaagatctctt
tctgatattgatgatcttactaccactttcttgaagttgaacaaggttgtaagtggacca
agaagcccgggtgttattggtgatcgtggatcaagagagaattctatttcggaatgggaa
caaagggatggtgttctaaactggattgatcagaatgcttatgatagtgaaggttctttg
gatggaaaacattggtcattacgaccccactcttctgtcaccaatttacacgattctaag
tccttgtatagaacatcgtcatatcctgagcagcaaatgcagcagcaacaccaccacctc
caacattgcgctagtgaaccggttcataactggcttgatcagcctttttatgataccgaa
actgctcaagatgacggaaagcgatggtcatcacaatcttattcatccattgcgcattta
caagagtcaaaacccttgtacagaacatcttcataccctgacaagcaacaagagcttctt
cgtttttctagtgaaccaattttgctaccaaagtcttcgtttacttcttatcctcccccc
aatggccgatctcagcaggcttctccaagtcatagtacaggccacttgaatattccttat
caagatgctggagctcagatggaactatcatctcaaagtcgttctcatttctccaattct
gcactacagtttagtggattaaaccatgggtcacattttagtagaaacatgcgccaatta
tctacaggttcccctcttaatcaccgaatgcagaatcaattgatcaaccaggcaggatta
tatcctggagagcatccgaatctccttagtaatatgttgcagcaacaattgaaccttcat
agaggaccggcatctcctcacttaatgtctcaattgcaacatcagcaacatagactgcat
cgtcctgttcagcaatctgcaggctacttatctggtttgcagtccgatttatttaatccc
tacctctcttctggcccatccataattagcaagtatgaacatatgcatggtcttcccgat
gttagagatcatagaccgaaatcaactcaaaaaggtaaacatagtctccgtttctccaag
cagggttcagatgccagtagccaaaagagtgatagtttttcattgcagtttaggtccaag
catatgacaagtgatgaaatcgagagtgttcttagagtgcagcatgccttgactcatagt
aataacctatatgtagatgactattaccaccaagcctgtcttgcaaaaaagccttctttg
gctaagttgaaaaatccattttgcccaacccaaatgagggacctcccttcacgatcccgt
tctatttctgagccgcatgctttccttcagattgatgccctagggagggttttattttca
tctattcgtcggcctcggcctcttcttgaggttgatcccccaaagtcttcctttaatggt
agctctgagcaaaatatttcggagaagccccttgaacaggagcctatgtttgcagccaga
gtcacaattgaggatgctctttgtcttcttcttgatgtagatgatattgaccgtttccta
gagattaatcagcttcaagacggtggaactcaattaagacgaagacgacaggttctgttg
gaaggactagcaacttcacttcaacttgttgacccactggggaagaatggaaataaagct
gggcttggtgctaaggatgaccttgtttttgtgcgattagtatcaattccaaaggggcgt
aagctccttataaagtatcttcagttgcttcttcctggtagtgagcttacgaggatagtc
tgcatggccatctttcgccatttaagattcttattcggtggtctcccctcagattcagca
gcttcagagattacgagtaaccttatcaaggttgtttgtcaatgtatcaaaggattggac
cttggtggtcttagtgcttgtcttgctgcagtggtttgttccgtagagcagcctccttta
cgccctcttggaagtacttctggagatggtgcttccattattttggtgtctgttcttgag
agggctactgaacttcttaccgaccctcatgccgcttccaactacaacatgggtaatcgt
tcattttggcaggcctcatttgatgaattctttggccttctcaccaagtattgtatgaat
aaataccatagtatcatgcaatccttgctcaaacaaaatgcaatagatgtggatgacatt
ggaccagatgctgctaaagctattagtacagaaatgcctgttgaacttttgcgtgcaagt
cttcctcacaccgatgatcgtcagaggaagttattactggattttgctcagcgtgcagtt
cctatggttggatttagtagtagtgctggggatagtagtaatcacatgagctcagagaca
gtgctaagttga
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