Lupinus angustifolius (narrow-leaved blue lupine): 109336368
Help
Entry
109336368 CDS
T04664
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109336368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lang03021
]
109336368
03019 Messenger RNA biogenesis [BR:
lang03019
]
109336368
Transcription machinery [BR:
lang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109336368
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109336368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
DUF2802
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
109336368
NCBI-ProteinID:
XP_019428468
LinkDB
All DBs
Position
LG20:complement(2433940..2439578)
Genome browser
AA seq
932 aa
AA seq
DB search
MSNEIIAQKLPPSILVGRFKALLKHRDDELRDSLGAPVPPPTTDEIVQIYELLLSELTCN
LKPIITYLTIIAEQQREHAKGIADAICAHILEVPADQKLPALYLLDSIVKNYGQEYVRYF
SLRLPEVFCVAYRQVQPSLHPAMRHLFGTWSKVFPPSVLQKIEAQLQFSQDVNNQSSTMN
FLRASESPRPSHGIHVNPKYLRQLDRSTVDSVAGEKLDSSGKASNISFGLVASKTHQFVS
SRVGMPSSPSRTGVDRPFSSSIDEYAVDNFATRITERESPRPAVDYAMAKASGRDEELSD
WQRKQYSGDGQNRFQTSMAYSLSSGHQRQSPRSLIDAYGCDKSQETSRNKPLLVERLDRN
GKDNMLSTSWQNTEEEEFDWEDMSPTLVDHSRNNVVLPSTIGFPRERPGILAANATSLEQ
DIRKGWSSGSQIPPVDDSSVTAEDAFPSSAYGQVSRFQNQIDQSLGSRQPHEAWKISHHP
SNSSQHLLNIRGGPRSHVMPPTDNIINTNANPFGIRPAASRISGIVSNMETYYPPVLPAS
FEIRPSVNAHATRPPTLNPISPLQRHARSHFEAINTSNPIMNHGPNKSSYMPEQLLESVE
NKDTGKARINQLPNHLAGLPQLQNFPSQDPSAPQYNHAVSLQGHGASLTTAMSNPLPVIQ
FPRSTQGIANSSFNFQGGAHPPLPPGRPRAPLQMIPRPNVSPFMPSQQPTVAYTTLINSL
MSQGMISLANQPPIQDSVGTEFNLDILKFRHESAINALYGDLPRQCTTCGLRFKCQEEHS
SHMDWHVTKNRMSKNRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLQTEKVEEKKDDEE
LAVPAEEDQNTCALCGEPFEEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRSQLGPIIHAK
CRSESSVPPSEDFGHDAGGANEEGSQRKRMRS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgaaatcatcgcgcagaagcttcccccttcgattctcgtgggtcgcttcaag
gcactgctcaagcaccgtgacgatgaactcagggattctctcggcgctcctgtgccgcca
cccaccaccgacgaaatagtgcagatttacgagctgctattgtcagagctcacgtgcaat
ttgaagccaattatcacctatctcactatcattgcggagcagcagagggaacatgctaag
ggtattgctgatgcaatttgcgctcacattctcgaggttcctgcagatcaaaagctacct
gcactctatcttttggacagtattgtgaagaattatggtcaagaatatgttagatatttc
tctttacgtctgccagaagttttctgtgtggcatacaggcaagtccagcctagtttgcat
cctgctatgcgccatttgtttggaacctggtcaaaagtttttccaccttctgtcctacaa
aagattgaagctcaattgcaattttctcaagatgttaataatcaatcatccaccatgaat
ttcctcagggcatctgaatctcctcgacctagtcatggtattcatgttaatccaaaatac
ttgcggcagttagatcgctcaactgtggatagtgttgctggtgaaaagttggactcatca
ggaaaggctagtaatataagttttggccttgtagctagtaagacacaccaatttgtatct
agtagggttggaatgccctcttcaccttcacgaactggagttgataggcctttttcttca
tctatagatgaatatgcagttgacaattttgctactaggataactgagagagagtctcct
cgtcccgctgttgattatgcaatggccaaagcatcaggtagagatgaagagttgagtgat
tggcagagaaaacagtattctggtgatggtcaaaatcggtttcaaacttctatggcatac
agccttagtagtggacatcagcgtcaaagtccaagatcactgattgatgcatatggctgt
gacaaaagccaagaaacttcaagaaataagcctttgttagttgaacggctggacagaaat
ggtaaagacaacatgttgtcaacatcatggcagaatactgaagaggaggagtttgattgg
gaggatatgagtccaacattagtagaccatagtaggaataatgttgtcttgccatcaaca
attggtttccccagggaaaggcctggtattcttgcagctaatgcaacttcgctagagcaa
gatatcaggaagggttggtccagcgggtcccagattcctccagtggatgattcttctgtt
acagcagaagatgcatttccctcttcagcttatggtcaggtatctcgatttcagaatcaa
atagatcagagtctaggatcccgtcaacctcatgaagcttggaagatttctcatcatcca
tctaattcttcacaacacttacttaatattaggggaggaccaaggagtcatgtaatgccc
ccgactgataacattatcaatacaaatgcaaacccatttgggattcgacctgccgcatca
aggatttctggtattgtctctaatatggagacttattatccaccagttttgcctgcatct
tttgaaataaggccttcagtaaatgcgcatgccactcgtcctcccactttaaatccaata
tctccattgcaaagacatgccaggagtcattttgaagctataaacactagtaatcccata
atgaatcatggtccaaataaatcttcatatatgcctgaacagttgttggaaagtgttgag
aacaaggatacaggtaaagcaaggataaatcagttgcctaatcatcttgctggactacca
cagctgcagaattttccatctcaggatccatctgccccacaatataatcatgcagtctct
ttgcaaggacatggtgcttctctaactacagccatgtcaaatccgctacctgttatacaa
ttccctcgatctacccaaggtattgcaaatagctcttttaattttcaagggggagcccat
ccacctctacccccaggccgccctcgtgcaccattacaaatgattcctcgtccaaatgtt
agtccattcatgccaagtcaacagccaactgttgcatataccactttaattaattcacta
atgtcccaaggcatgatctcattggctaaccagccccctatacaggattctgttggaact
gagtttaatctagatattctgaagtttcgtcatgaatctgcaatcaatgctctatatggt
gatctcccaagacaatgcaccacctgtgggctccgattcaaatgccaagaggagcacagt
agtcatatggattggcatgtgaccaagaaccggatgtctaaaaaccgtaagcagaagcca
tctcgtaagtggtttgtgagtgacaggatgtggcttagtggtgcagaggcattgggaaca
gaatcagttccaggttttttgcaaactgagaaagtagaggaaaagaaagatgatgaagag
ttggcagttccagctgaagaggaccagaatacatgtgcattatgtggagagcctttcgaa
gagttttacagtgatgaaatggaggaatggatgtatagaggagctgtatacctgaatgca
cccacggggacaacagcaggcatggacaggtcacagttaggtcccattattcatgctaaa
tgcagatcagaatctagcgtgcccccctctgaagattttggacatgatgcagggggtgcc
aatgaagagggcagtcaaagaaaacgaatgcggagttga
DBGET
integrated database retrieval system
