Lupinus angustifolius (narrow-leaved blue lupine): 109336517
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Entry
109336517 CDS
T04664
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109336517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lang03041
]
109336517
Spliceosome [BR:
lang03041
]
Complex B
Other components
Prp19-related factors
109336517
Complex C
109336517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
zf-CCCH
zf-CCCH_3
RRM_occluded
RRM_3
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
109336517
NCBI-ProteinID:
XP_019428704
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All DBs
Position
LG20:11365682..11370790
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AA seq
485 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDSIPKSDVNREYFAE
EHDRKTRAGMDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLEAPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGR
PQSAKPESDDSNQARQQASVAHSGLLPRAIISQQQSQDQNQGMVYYSNPPPQPQRSYYPS
MDPQRMGALIPSQEGPPGGPSGSGENKPIMEKQQMQHYAHPMRPPPPGQYQHQYYPPYGY
MPPVPHYQQQYPPPPYNAPMPPSHPPAVNHPYQHSMQPGSSQAGSAQGGSAPAEAGTSSS
GSQQQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagatcacgaagccgatggatgggagcgctccgatttcccc
atcatctgtgaatcttgcctcggcgacagtccctacgttcgaatgacaaaagcagagtat
gacaaagaatgcaagatttgtacccggccttttactgtttttagatggagacctggccga
gatgcaagatataagaaaagtgagatttgccagacgtgtagcaaattgaaaaatgtttgt
caggtgtgccttctggatcttgaatatggattgcctgttcaagtccgtgatacagctctg
agtattgattctaatgattccattcccaagagtgatgttaatagggagtattttgcagaa
gagcatgaccgcaagactagagctggtatggattatgaatcctctttcggcaaagcacgc
ccaaatgatactatcttgaagcttcaaaggacaacaccatattacaaaagaaaccgtgca
catgtttgcagtttctacataaggggtgagtgtactagaggagctgagtgcccctatagg
cacgagatgccagtaactggggagttgtctcaacaaaatatcaaagatcgttattatggg
gtgaatgatccagtggcattaaagctacttggcaaggcaggagagatgccctctctggag
gctcctgaagatgagagcattaaaactctttatgttggtggacttgatgcaagggtcact
gagcaggatttgcgggataacttctatgcccatggtgaaattgaatccatcaaaatggtt
cttcaacgggcttgtgcttttgtgacctatacaaccagagaagccgccgaaaaggcagca
gaagaactctcaaacaaactggttattaagggcctaaggctaaagctgatgtggggtagg
cctcagtcggcgaaacctgagtcggatgactccaaccaagcaaggcagcaggcttctgtg
gctcatagcgggttgttgcctagagcgattatatcacagcagcaaagccaggaccagaac
caaggaatggtttactatagcaatccacctcctcaaccgcaaagaagctattacccatca
atggatcctcaaagaatgggtgctcttattccttctcaagagggtcctcctgggggacct
tccgggtctggggagaacaaacccattatggagaagcagcaaatgcaacattatgcccat
ccaatgaggcctccaccaccaggccaatatcaacatcagtattatcctccatatggctat
atgcccccagttccccattatcaacaacagtacccaccaccaccatataatgctccgatg
cctccatcccacccaccagctgtaaatcatccttatcagcattccatgcagccagggtct
tcacaggcagggtctgctcagggtggctctgcacctgccgaagccggaacatcgtcatca
gggtcacagcagcagtga
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integrated database retrieval system
