Lupinus angustifolius (narrow-leaved blue lupine): 109342446
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Entry
109342446 CDS
T04664
Name
(RefSeq) endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lang03036
]
109342446
Chromosome and associated proteins [BR:
lang03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109342446
microRNA pathway
RISC loading complex
109342446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
DND1_DSRM
AAA_22
SNF2-rel_dom
Dicer_PBD
PhoH
Motif
Other DBs
NCBI-GeneID:
109342446
NCBI-ProteinID:
XP_019435974
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All DBs
Position
LG03:complement(23600328..23615379)
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AA seq
1630 aa
AA seq
DB search
MGSSEIDQNDSQSISSNNPNPIDPRSYQLEVFEVAKKRNTIAVLDTGSGKTLVAVMLIKE
AHKAINSSHIKKLIIFLAPTVNLVNQQFKHIKDLTGFKVEEYYGAKGVDTWDLKIWEKEI
SENDVLVMTPQILLDALRKAFLSIEMICLMIIDECHRATGKHPYSKIMEEFYHKANEKPK
IFGMTASPVGKKVGVSSTKGCEGQISELEYILDSQRYTVEDRKEIDIHIPSAKESCRYYD
QAQYPVLRLKSKIEALFEFNALFSELQSLTLREDVDYKFKKLHNGMFNKLEKILYCLEDL
GPICAYEAAKMYHENFSKIIGGCEVYRKASLNCKLFMEKVMQLIEESLHLDDRKNSEVEF
DYSKAVELRHISPKLLELIKIFQSLGESSKMSCLIFVERKLTAKLMEKFLKKVSQISHFT
VSYITGGNTAVDALTPKKQKEILDSFRSGGVNLLITTDVAEEGIDVPNCSCVIRFDLPKT
VRSYVQSRGRCRQPNSQFIVMLERGNLKQRNQLFDIIRSERSMTNAATNKDHNASNLRVF
TVGKTNAYHVNSTGASVTLDSSVGLINRYCEKLPHDKYSRVKPTFEFQPMGGGYTCKLTL
PPNAAFQVIVGPSGKDVHLARHLVCLEACKKLHQMGALNDHLVPLIKEEPSEADLIVKNK
ESSSGAGRGTTKRKELHGTTSIRALCGTWGDKLDGTKFHAYKFDFTCNIVSEIYSGFVLL
VESKLDDDVGNMEVDLYLISKMVKASVSSCGQVDLDAEQMMNAKCFQELFFNGLFGRLVL
RSKSAARGGREFLLQKDTNTLWNPTYLYLLLPLEKLDDSCMRSLTINWSGIKSCASAIEF
LRKKFLLVAGNCCKDSDDTKITSPCHTSPMEVESQDKNSIYFANCMLDVNILKDVVVLAI
HTGRIYCIVELDINLSAESPFDGNDEKSGGEPITFSGYYKKRYGITLRHPGQHLLRLKQS
HNAHNLLLNFHEEDGRDKTSQTGLAQSKMPAHVYIPPELLYVLDVKRDVLRSMYLLPSLM
HNLQSFMLSSQLREEIGGQTNNFNIPSPLILEALTTLRCAEKCSMERLELLGDSVLKYAV
SCHLFLKYPKKHEGQLSGMRSLAVCNSTLHKRATDHKLQVTFTVLVIIYLQSRNYSLILS
VVYYMDVSVSTLESMFEFSRWGGYYVAGGLIAALHVMKWLGIDAELEPSLVDKAITAASL
HAYVPKVKEIGSLEMKIGYEFSIKGLLLEAMTHVSGKEVGIDCCYERLEFLGDSVLDLLI
TRHLYQSHTDIDPGELTDLRSASVSNENFAQVAIRRNLHLHLLHGSELLRSQIADYVKVI
SESEDNTRSFQGIRAPKPLGDLVESIAGAMLIDTKLNIDQVWKVFNPLLSPIVTPDKLEL
PPWRELNELCDSLRCFVKESCVKKGTMVHATLSVQLHNTLLVREGKGQNAKTAKGDAALH
LLKDLEKRGISYSSSMSKRKRDASGLTDENSLKPVAQLEYKRHKVDETNLTANARTGLLP
LKDTSMEASNLGASVPVIGSINMKKGGPRSALYELCKRLQWPLPEFDSTEYKDRSLFQGC
EGLEGSKGQNCFVSKISLCIPNGTALECEGEARPDKKTSHDSAALQMLYELHRLGKLKIT
DYPTLSVSSK
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttcagagattgatcaaaacgattctcaatctatttcttccaacaatcccaac
cccattgaccctagaagttatcaattggaggtgtttgaagttgcaaagaagaggaataca
atagcagtgttggatacaggttctggtaaaactttggtagctgtgatgctcataaaagaa
gctcataaagctatcaactctagtcacattaaaaagttgattattttcttagctcccact
gttaatcttgtgaaccagcaatttaaacatataaaagatcttacaggttttaaagttgag
gagtactatggggctaaaggagttgatacatgggatttaaaaatctgggagaaggagatt
agtgaaaatgatgtactggttatgacgccccaaattcttttggatgctttaagaaaggca
ttcttaagtatagaaatgatatgcttgatgattattgatgaatgtcaccgagcaactggc
aaacatccctattcaaaaataatggaagagttctatcacaaagctaatgaaaagccaaag
atttttgggatgacagcatcaccagtaggtaaaaaagtcggtgtttcctctaccaagggt
tgcgagggtcaaatatcagaacttgaatacatcttggattctcagagatatactgttgaa
gataggaaagaaatagatatacatatcccttctgcaaaagagagttgtagatattatgac
caagcacaataccctgtgttgaggttgaagtcaaagattgaagccttgttcgagttcaat
gcattgttctcagaattgcaaagtttgacgctacgtgaggatgtggattataaatttaag
aaactgcataatggcatgttcaataaactcgaaaaaatcttatattgccttgaagatctt
ggacccatatgtgcttatgaggctgctaaaatgtatcacgaaaatttctccaaaattata
ggaggctgtgaagtttacagaaaagcttctctcaattgtaaacttttcatggaaaaagta
atgcaattaattgaagaatccctccatctcgatgacagaaagaattcggaggttgaattt
gattattcaaaggcagtagagttgagacacatatctccaaaattactcgaacttattaaa
atcttccagtcgcttggagaatctagcaagatgtcatgtctcatttttgtcgaaagaaaa
cttacagctaagttaatggaaaaatttctaaagaaagtatcccagatatctcatttcaca
gtatcctatataactggaggcaatactgcagtcgatgcgctgactcctaaaaagcagaag
gagatattggattctttccgctctggaggggtcaatctattaattactactgatgtagct
gaggaaggaattgatgtgccaaactgctcttgtgtgatacgttttgacctacccaagaca
gttcgtagttatgtccaatctcggggaagatgtcggcagcctaactcccaatttattgtg
atgttggagaggggaaacttgaagcaaagaaatcaactttttgacatcatcaggagtgag
cgctccatgactaatgcagctactaataaagaccacaatgcttctaatttaagggtgttt
actgtagggaaaacaaatgcataccatgtgaattctactggagcatcagtcactttagat
tctagtgttggacttataaatcgatactgcgaaaagctaccacatgataagtactcccgt
gtgaagcctacttttgagtttcagcctatgggagggggttacacatgtaagttaacattg
ccgcctaatgcagctttccaagtaatagttggtccctcaggaaaggatgttcatttggca
aggcatcttgtatgtttagaagcttgtaagaagctgcatcaaatgggcgccttaaatgat
catcttgtccctctcattaaagaagagccttcagaagctgatcttattgtgaaaaacaaa
gaatcgagttcaggtgcaggaagaggaaccacaaaaagaaaggagttacatggcacaacc
agcattcgtgcattatgtggtacatggggagacaaacttgatggcacgaaatttcatgcc
tataagtttgatttcacatgtaatatcgtcagtgaaatttactctggctttgttcttctg
gttgagtcaaagcttgatgatgatgttggaaatatggaggtagatctttatttaatctca
aagatggtgaaggcttctgtctcttcatgtgggcaagttgacctggatgctgaacagatg
atgaatgctaaatgcttccaagagctttttttcaatggtttgtttgggaggttggtgctt
cggtctaaatcagcagcaaggggaggaagggagtttttacttcaaaaagacacaaataca
ttatggaacccaacatacttgtatttgcttctaccacttgagaaactggatgattcatgt
atgcgatcattgacaataaattggtctggaatcaaatcttgtgcttctgctattgagttt
ttgaggaagaagtttttgttggttgctgggaattgttgtaaggatagtgatgacacaaaa
atcacgtcaccttgtcataccagtccaatggaggtggaaagtcaagataaaaatagcatt
tactttgctaattgcatgcttgatgttaatattctcaaagatgtggttgttttggccatt
cacaccggcagaatctattgtattgtggaattagatatcaacctatccgctgaaagtccc
ttcgatggcaacgatgaaaagtctgggggtgaaccgataacattctcaggttactacaaa
aaaaggtatggcattacgctgaggcatccagggcaacatttgttacgtttgaagcaaagt
cataatgcgcacaatcttcttttgaacttccacgaggaagatggtcgggacaagacatca
caaactggcctggcacaatcgaagatgcctgcccatgtttacattccacctgagcttctc
tatgttcttgatgttaaaagagacgttttgaggtcaatgtacttgctaccatcactgatg
cataatcttcaatcgttcatgttatccagtcagcttagagaagagataggtggccaaact
aacaatttcaacattcctagccctctgattctagaagcacttacaactttaagatgtgct
gaaaaatgttcaatggaacgtcttgagttacttggagattctgttctgaaatatgcggtg
agctgtcacctctttcttaaatatcctaagaaacatgaaggacaattatctggcatgcga
tcactggctgtttgtaattcaaccctacataaacgggcaacagatcacaaattgcaggtt
acttttactgtgcttgttattatttatctacagtcaagaaactattcattaatattatct
gttgtctattatatggatgtatcagtatcaacattggaaagcatgttcgaattcagcagg
tggggggggtactatgtggctggtggattaattgctgcacttcacgtgatgaagtggctt
gggattgatgctgaacttgaaccttctttggttgataaagccataactgctgcgtctctc
catgcatatgtgccaaaagttaaagagattggaagccttgaaatgaaaattggttatgaa
ttttccatcaagggactcttactggaggcaatgacacatgtatccgggaaagaagttggg
attgactgctgttatgagaggcttgaatttctcggtgactcagtactggaccttcttatc
acacgccatctttatcagagccacacagatattgatccaggagaattgactgacttgcgt
tccgcttctgtcagtaacgaaaattttgctcaagttgctataagaagaaaccttcacctg
caccttttgcatggctcagaattattgcggagccagattgcagattatgtaaaggtcatt
tctgaatcagaggacaatactagatcattccaaggcattagagctcccaagccacttgga
gatctagtcgaaagtattgctggggctatgctaattgataccaagctcaatattgatcaa
gtgtggaaagttttcaaccctttgctatctccaattgttactcctgataaacttgaactg
cctccgtggcgtgaattaaatgaattatgtgactctcttcggtgttttgtgaaagaaagt
tgtgtaaagaaaggaaccatggtgcatgccacgcttagtgtgcagttgcataataccttg
ttggttcgggagggaaaggggcaaaatgcaaaaactgcgaaaggagatgctgctcttcat
ttgttgaaggaccttgagaagagaggaatttcatatagcagtagcatgtcaaagagaaaa
cgagatgcttctggtcttactgatgaaaactccttgaagccagtagcacagttagaatat
aaaaggcacaaagtggatgaaactaacttaactgcaaatgcacgaactggtttgctgcct
ctcaaagacacttccatggaagcctctaacctcggtgcttctgttccagttattggctca
attaatatgaagaagggaggacctcgaagcgcactatatgaactgtgcaagagactacag
tggccattgcctgaatttgattcaacagaatataaggatagatctctattccaagggtgt
gaagggctggaaggaagcaagggacaaaactgttttgtgtcgaaaattagcttatgcata
cccaatggtactgctctagaatgcgaaggagaggctagacccgataagaagacctcacat
gactctgctgcacttcaaatgctttatgagctacatcggctgggaaaacttaagataact
gattaccctaccctttctgtttcttcgaagtaa
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