Lupinus angustifolius (narrow-leaved blue lupine): 109343546
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Entry
109343546 CDS
T04664
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03013
Nucleocytoplasmic transport
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109343546
09122 Translation
03013 Nucleocytoplasmic transport
109343546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109343546
03041 Spliceosome [BR:
lang03041
]
109343546
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109343546
Spliceosome [BR:
lang03041
]
Complex C
Other components
EJC/TREX
109343546
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109343546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Cytochrom_B562
ABPF_N
CRLF3_C
Motif
Other DBs
NCBI-GeneID:
109343546
NCBI-ProteinID:
XP_019437446
UniProt:
A0A4P1RNY7
LinkDB
All DBs
Position
LG03:complement(16658234..16689512)
Genome browser
AA seq
1859 aa
AA seq
DB search
MSLPPVQYLYVTEDSLREWKNGNPNIKLSDPVPLLRFLYELCWTVVRGELPLQKCKVALD
SVRFSEKASNEKLASNFADIVTQMAQDHTMSGDFRSRLIKLARWLVDSELVPVRLLQERC
EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEVP
TEKASTATIGIIKSLIGHFDLDPNRVFDIILECFELQPENDVFLELIPIFPKSHASQILG
FKFQYYQRMEVSSSVPFGLYKLTALLVKQNFIDLDSIYAHLLPKDDEAFEHYNSFSSNRL
AEANKIGKINLAATGKDLMDDEKPGDVTIDLFAALDMETDAIEERTPELQNNQPLGLLTG
FLSVDDWYHAHILFDRLAPLNTVEHTQICSSLFRLIEKSISSAYDVIRQTHLQKSGSPTG
GGTDAMDVDNSSGDESFIDLPKELFQMLACAGPYLYRDTMLLQKVCRVLRGYYLSALELV
SRRDGGALNPHLHLKDARLRVDDALGTCLLPSLQLIPANPAVGHEIWELMNLLPYEVRYR
LYGEWERDDERFPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTI
VHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLALGGRDKLKDDGLNLSDWLQSLA
SFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDA
MAGSETLRYQATSFGVTRNNKALIKSTSRLRDSLLPKDEPKLAVPLLLLIAQYRSLVLIN
ADAPYIKMLSEQFDRSHGTLLQYVEFLCNAVTPAINYGVLIPSLNDLVHLYHLDPEVAFL
IYRPVMRLFKSQRTPVVCWPLDDKNSASDASTNIESDPADYSCSMVLDLGSAQNPSSWSY
LLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRKRYESEITKLHANLKSLEELTDN
SSSAITKRKKEKERVQESLDHLINELDKHEEHVASVRRRLSHEKDKWLSSCPDTLKINME
FLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYE
AGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWI
HRITRLLIQCLESSEYMEIRNALIMLTKISGVFPVTRKSGINLEKRVAKIKSDEREDLKV
LATGVAAALAARKPSWVNDEEFGMGFLELKPTQSITKSLAGASVQSGMGLGVSQAEYSSD
KHLDSGNTVKEQIVRPKTGDSKSERSERTAVTKSESVLVKLKGSSMVNGLDAQSSLPSSS
VKTGVSKSTENQKQAEESINRASDEHVTRAAESRNSAKRSGPAGSVSKPSKQDLAKEDGR
SGKAVARTSGSSSSDRDPQTQASNGRQTGTTNVSSLVNANGSTVAGSTKSSAPSAKMDGP
GSESKVEVGAAKYFDVRTSVVKDDRNDAADLPRGSSSRVVHSGGPDMTVLTYKSSDKVQK
RAESAEGPDRLGKRRKGEVDLRDVEGEVRFTEREKLVDPRLADDRSGSDELGVYRTGPLE
RPKEKGNERYEREHRERLDRLDKSHGDDFIAEKSRDRSIERYGRERSLERGSDRNFNRAP
DKAKDERIKDDRSKLRYNDTPVEKSHVDERFHRKSLPPPPPLPPNMFPQSVDANRRDEDA
DRRYGATRHSQRLSPRHEEKERRRSEEIVVSHDDAKRRKEDDFRDRKREERDELSMRVDE
RERDREREKGNILKEELDLNAASKRRKLKREHLPAIEPGEYSPATPQPPAQGGIGMSQAY
DGRDRGDKKGPMIQHISFNDEPGLRIASKLNRRDSDSMYDREWDDEKRQRADQKRRHRK
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccaccagtacagtatctatacgtaacagaggactctcttcgcgaatggaag
aatggaaaccctaatatcaagctctctgatcctgttccattgcttcgattcctctatgag
ctatgctggactgtggttcggggtgaattgccgttacagaagtgtaaagtagcattagat
tctgtcagattctcagagaaagcttcaaatgagaaattagcttcaaactttgcagatata
gtaacccagatggctcaagatcatacaatgtcaggagatttccgttctcgtctcatcaaa
ctggcaagatggcttgtagactctgaattggttccagttaggctacttcaagaacgttgt
gaggaagaatttttgggggaggctgaattgatcaaaataaaagctcaggaattgaaggga
aaagaggtcagagttaatacacgacttctttatcagcaaaccaaatttaaccttctcaga
gaagagagtgagggttatgcaaagcttgtcactcttctttgccgggactctgaagttcca
actgaaaaggcatctactgcaacaattggcattattaagtccttaattggccattttgat
ttggacccaaatcgcgtttttgatattattcttgagtgctttgaacttcaacctgagaat
gatgtatttttggagctcattcctatttttccaaagtctcatgcttcacaaattcttgga
tttaaatttcaatattatcagcgcatggaagtcagcagctctgtgccatttgggctctat
aaacttacagccttgctggtgaagcaaaattttattgatcttgatagcatatacgcacat
ctacttcccaaggatgatgaagcatttgagcattataacagtttttcttccaatcgcctt
gctgaggctaacaaaattggaaaaataaacctagcagctaccggaaaagatctcatggat
gatgagaaaccgggtgatgtcactatagatctctttgctgctttagacatggaaactgat
gcaattgaagagcggacacctgagcttcaaaacaaccaacctttggggttgcttactggc
ttcctttctgtggatgattggtatcatgcacatatactatttgaccgtcttgcaccactt
aatacagtggaacatacacaaatatgtagcagtttgtttaggcttatcgagaagtcaatt
tcttcagcatatgatgttattcgtcaaacacatcttcaaaagtctggatcgcccacaggt
ggtggcaccgatgctatggatgtagataactcttcaggagatgaatctttcatagatctt
ccaaaggaactttttcaaatgcttgcttgtgctggaccttatctctaccgtgatactatg
ttgttgcagaaggtatgtagggtgttgcgaggttattatctttctgctctcgaacttgta
agccgtagggatggtggtgctttaaatcctcatctacaccttaaggatgcaaggctaagg
gtggatgatgctttgggaacatgtttacttccttcactgcagttgattcctgccaatcca
gctgtgggccatgagatttgggagctaatgaatctccttccttacgaggtgcgatatcgt
ttatatggtgaatgggaaagggatgatgagcgctttcctatgctcttggctgcaagacaa
actgccaagttggatactagacgcattttgaaacggctagcaaaggaaaacttgaaacag
ttgggtcggatggttgcaaaattagctcatgccaaccctatgacagtccttcgaacaatt
gtccatcagattgaggcatacagagacatgattactcctgtagtggacgcatttaagtat
ttaactcagcttgagtatgatgtgttggaatatgttgtgattgagcgtttggcacttggt
gggcgtgataagttaaaggatgatggacttaatttgtcagactggcttcaatctctagcc
tcattttggggccacctatgtaagaagtacccatcaatggaattaaggggccttttccaa
tatcttgtgaatcagttgaaaaaggggcaaggaatcgagcttgttctactgcaggagctc
attcaacaaatggcaaatgtccagtacactgagaatttgactgaggaacagctggatgct
atggcagggagtgagactctcagataccaagcaacttcttttggagtaactcgaaataat
aaggctctgataaagtcaactagcagacttagagattcattacttccaaaagatgaaccg
aagttggcagtacccctcttattgcttattgcccagtatcgttctctggttctcatcaat
gcagatgcaccctacattaagatgcttagcgagcagttcgatagaagccatggaactctt
cttcaatatgtcgaatttctttgcaatgcagttacgccagcaataaactatggtgtcctt
attccctcgctcaatgacctggtccacctttaccacctggaccctgaggttgctttcttg
atatatcgccctgtgatgaggcttttcaagtctcagaggactcctgttgtttgctggccc
ttggatgataaaaattctgcaagtgatgcatctacaaacattgagtctgaccctgcagat
tattcttgcagtatggttctagatcttggttctgctcaaaatccttcaagctggtcatat
cttcttgatactgttaaaaccatgttgccttcaaaagcatggaatagcctatctcctgat
ctttatgcaacattttggggtctcacattatatgatctgtatgttccaagaaagcgttat
gagtctgaaataaccaagctgcatgctaacctcaagtctttggaggagcttacagataat
tctagctcagcaatcaccaagaggaagaaagaaaaggaaagagttcaagaatcccttgat
catcttataaatgaacttgataaacatgaagagcatgttgcatctgttcgtagacgcctt
tctcatgaaaaggacaaatggttaagttcctgtccggataccttgaagatcaacatggag
tttcttcagcgttgtatatttccgcgctgtactttcagcatgccagatgctgtttattgt
gctatgtttgtgcacacacttcattcccttggaacccccttttttaatacagtcaaccac
atagatgttctgatttgtaagaccttacaaccaatgatatgctgctgcactgaatacgaa
gcaggcaggcttggcaggtttctgtatgaaactttgaagattgcttactattggaagagt
gatgaatctatttatgaacgtgagtgtggaaacatgccaggctttgctgtttattataga
tatccaaacagccaacgagttacatatggacagttcattaaggtacactggaagtggatt
catagaatcacacggttactgattcagtgtttggaatctagtgaatacatggaaatcaga
aatgctctgataatgttgacaaaaatatctggcgttttccctgttactcggaagagtggg
atcaaccttgaaaagcgggtagctaagattaaaagtgatgaaagagaggatcttaaggtg
ttggcaactggtgttgcagcagcattagctgctaggaagccttcttgggttaacgatgaa
gaatttggtatgggttttcttgagttgaagcctacacaatccattactaaatccttggct
ggagcatctgtacaaagtgggatgggtcttggtgtttctcaagctgaatattccagcgac
aagcatttggactctggaaacactgtcaaagagcagatagtaagaccaaaaactggagac
agcaagtcagaaagaagtgaacgcactgctgtaaccaaatctgaatctgtcctagtaaaa
ctcaagggtagttcaatggtgaatggattggatgctcaatcatccttaccctcatcttct
gtaaaaactggagtttcaaaatctacggaaaaccaaaagcaagcagaagaatccataaat
agagcatcggatgaacatgtgacaagagctgctgagtcaaggaattctgcaaaacgctca
gggcctgctggctcagtttcgaagccctcaaaacaagatcttgcaaaagaggatggtaga
tccggaaaggctgttgctagaacttctggatcgtcgagcagtgacagggatccacaaacc
caggcatccaatggaagacaaactggaactacaaatgtatcttctttagtcaatgctaat
ggtagcactgttgcaggttctacaaaaagctcagctccatcagcaaagatggatggtcct
ggtagcgaatcaaaggtagaggttggagctgccaagtattttgatgttaggacttctgtg
gttaaggatgacagaaatgatgcagctgacttaccgagaggatcctcttctcgtgttgtt
cattccggggggcctgacatgacagttcttacttataagtctagtgataaagttcagaag
agagctgaatctgctgaaggaccggatagacttggtaaacgacggaaaggagaagtagat
ctaagagatgtagagggtgaagttcgattcactgaaagagagaagctggtggatccccga
ttggctgatgacaggtcagggtctgatgaacttggggtgtataggacaggtccattggaa
aggccaaaggaaaagggcaatgaaagatatgaaagggaacatagagaaagattggatcgt
ctggataagtctcatggggatgatttcattgcagaaaaatctagggataggtcaatagaa
agatatggaagagaaaggtctcttgagaggggtagcgataggaatttcaatagagcccct
gataaggctaaggatgaaagaatcaaggatgatagaagtaagttacgatacaatgataca
cctgtagaaaagtctcatgtcgatgagcgcttccataggaaaagcttgcctccgccacct
cctttacctcccaatatgttcccacaatctgttgatgcgaataggcgtgatgaagatgct
gataggaggtatggagctacaagacattctcagaggctttctcctaggcatgaagaaaaa
gaacgaaggcggtctgaagaaattgtggtttctcatgatgatgccaagcgcagaaaagaa
gatgattttcgagatcgaaaacgtgaggaacgagatgaattgtcaatgagggtggacgag
agggaaagggacagggaaagagaaaaaggaaacattttaaaggaagaattggacttaaat
gctgcatccaagaggcgtaaacttaagagggagcatctaccagcaattgaacctggggag
tattcaccggcaacccctcaacctcctgcccagggtggtattggtatgtctcaagcatat
gatggaagagacaggggagacaaaaagggacccatgatccagcatataagtttcaatgat
gaacctggtctcaggattgccagcaagctgaatcgtcgtgattctgattccatgtatgac
cgagaatgggatgatgagaagagacaaagggctgatcaaaagagaaggcacaggaagtaa
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integrated database retrieval system
