Lupinus angustifolius (narrow-leaved blue lupine): 109343560
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Entry
109343560 CDS
T04664
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109343560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lang03019
]
109343560
03012 Translation factors [BR:
lang03012
]
109343560
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109343560
Messenger RNA biogenesis [BR:
lang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109343560
Translation factors [BR:
lang03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109343560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
T2SSE
AAA_19
AAA_16
ATPase
PhoH
NACHT
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109343560
NCBI-ProteinID:
XP_019437462
LinkDB
All DBs
Position
LG03:17219881..17235369
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AA seq
1221 aa
AA seq
DB search
MPHYSAIFQGYLRFKPTFSIPFFTAMSLRSQPLSLTRRGLHLHPAAAKTSRLRSIRVPSC
SVALDLDSSGNRRRGPGFKQRTVAVPFWTHQTSGYGRFAYQDFNSDDEDDDSDVELFSSH
SRARTQQKQPQQQKQQPGDSTHENIDEWRWKLTMLLRSTDEQEVMSREKKDRRDFEQLST
LATRMGLHSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPFGVHREVDTHLRAHLSQK
ATNSIASFDDSLYRSSDGRNNPAGEGLYGRPEPMTHTSIAKEKILQRRSLQLRNQQQDWQ
ESPEGKKMLDFRRSLPAFKEKDAFLKVISENQVVVVSGETGCGKTTQLPQYILESETEAA
RGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVL
LRRLLVDRSLNGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFS
SYFDGAPTMHIPGFTYPVRSHFLEDILQMTGYQLTPYNQIDDYGQQKTWKMQKQADAFKK
RKSQIASTVEDALEVADFKGYSPRTRESLSCWSPDSIGFNLIEHVLCHIVKNERPGAVLV
FMTGWDDINSLKNQLQAHPLLGDQSQVLLLACHGSMSSSEQRLIFENPEGGVRKIVLATN
MAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQSGECY
HLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQSPEPLSVKNAVD
YLKTIGALDEDENLTVLGRKLSMLPVEPKLGKMLILGAIFKCLDPIMTVVAGLSLKDPFM
MPADKKDLAESSKAHFAGRAYSDHLTLVRAYEGWKEAEAQQAGYEYCWRNFLSSQTLRAI
DSLRKQFFYLLKDTGLVDHNSVAYNTWSHEEHLLRAVICAGLFPGVSSVENKPKSITLKT
MEDGQILLSGNSVNGNVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNISRGG
LDGHLKMLEGYLEFFMKPELAKTYLRLKSEMEELIQKKLLDPKLDIQSHNELLSAVRLLV
SEDNCEGRFVFGRKVQSQLKKEANSKSGGGGDGGGEGETDNFKNHLQMFLNRAGHDSPTY
KTTQLKNNQFRSTVIFNGLNFVGQPCVGKKLAEKSAAAEAILWLKGDTHSPNNDDINHAS
LLLKKSNKKSKKKSLNSAKWS
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgcctcactactcagccattttccaaggctacctcagattcaaacctactttctctatt
cctttcttcaccgccatgtccctccgttctcaacctctttccctcactcgcagaggcctc
cacctccaccctgccgccgctaaaacctctcgcctccgttctattcgtgttccgtcatgt
tccgttgcgcttgatcttgatagctccggtaaccgtcgacgtggtccgggatttaagcag
agaactgttgctgtgccgttttggactcaccagacctctggttatggtcgttttgcttat
caagattttaattctgatgatgaggatgatgattctgatgttgagcttttctcttctcac
tctcgcgctcgaactcaacagaaacaaccacaacagcaaaaacaacaaccgggtgattca
actcatgaaaacattgacgagtggagatggaagctgaccatgcttcttcgcagtacagat
gaacaagaagtcatgtcaagggagaaaaaagaccggcgtgattttgaacagctttcaact
ttagcgactaggatgggtttgcatagccggcaatatgcaagagttgttgtctttagcaaa
gcacctctgccaaattaccgtcctgatcttgatgataagcgtccgcaaagagaggtagtc
ttaccatttggtgtccatagagaagtagacactcatcttcgtgcccatctttcgcaaaag
gctacaaacagtatagcctcttttgatgattccttgtatagatcaagtgatggcagaaac
aatcctgccggtgaaggactttatgggcggccggagcccatgacccataccagtattgcc
aaggagaagattcttcaacggagaagtttgcaactgcgtaatcagcaacaagattggcag
gagtctccggaagggaaaaagatgcttgattttcggagaagtcttccagcgttcaaagag
aaggatgcatttttgaaagtcatttcagaaaatcaggtcgttgttgtctcaggtgaaact
ggttgtggtaagaccacacaacttcctcaatacatattagaatccgagactgaagctgca
cgtggagctgtatgtaacataatttgtactcaacctagaagaatatctgctatgtctgtt
tctgaaagagttgcagcagaacgtggcgagaaattgggagaatctgttggctacaaagtt
cgtctggaaggtatgaaaggaagggacacccggcttcttttctgcactacaggtgtatta
ttgcggagattacttgttgatcggagtttaaatggggtaactcatgttattgttgatgaa
attcatgaacgtggaatgaatgaagattttcttctcattgtcctgaaggatcttcttcct
cgccgacctgatttgaggttaattttgatgagtgcaaccttaaatgccgagcttttctct
tcctactttgatggtgctccaaccatgcatattcctggttttacatatccagttcgttcc
cattttcttgaggatattctgcaaatgactggatatcaattgactccttataatcaaatt
gatgactatggtcaacaaaaaacatggaaaatgcagaaacaagctgatgctttcaaaaaa
agaaagagccagattgcatccactgttgaggatgcactggaagtagcagactttaagggg
tatagcccacggactcgtgagtcattgtcctgctggagccctgactcaattggttttaac
cttatcgaacacgttctttgccacattgtcaagaatgaaaggccaggtgctgttttagtt
tttatgactggttgggatgatataaactccttgaagaatcagcttcaagctcatcctttg
ttgggtgatcagagtcaagtgttgcttcttgcatgccatggctccatgtccagctctgag
cagaggttgatatttgagaatcctgaaggaggggtgaggaaaattgttcttgcaactaat
atggctgaaactagtattaccatcaatgatgttgtctttgtggttgattgcggaaaagca
aaagagacatcatatgatgcactaaataacactccttgtttgcttccatcttggatttca
aaagctgctgctagacagagaagaggaagggctggtcgtgttcaatctggtgaatgttac
catctttatccccgatgtgtttatgatgcttttgctgattaccaattgccagagcttcta
agaacacctttgcagtccttatgtctgcaaatcaaaagtctacaacttggaagcatctct
gagtttttatctagagctctgcagtcaccagagcctttatcggttaaaaatgctgttgac
tatttaaagactattggggccttagatgaggatgagaatttgacagttctagggcgcaag
ttgtcaatgcttcctgtagagcccaaacttggcaagatgctcattttgggagctatcttc
aaatgtttagatcctataatgactgttgttgctggtcttagtttaaaagatccatttatg
atgccggctgacaagaaggatcttgcggagtcttccaaggcccactttgctggccgtgcc
tatagtgatcatcttacacttgtccgggcttatgagggttggaaagaggctgaagcacag
caagctggttatgagtactgttggcgaaatttcctttcttctcaaacacttagagccatt
gactctcttcggaagcaattcttttacttgctcaaagatactggtttggttgatcacaat
tctgtagcctacaacacatggagtcacgaagagcatctattgcgagctgtcatctgtgca
ggattgtttcctggagtatcctctgttgagaacaaacctaagtcgataacacttaaaaca
atggaggatggtcagattcttctgtctggaaactctgtaaatggtaatgtacccagaatt
ccgtacccatggttagtatttaatgaaaaggtgaaagtgaattcagtattccttagggat
tcaacagggatatctgattctgtgctgctcttatttggcgggaatatatccagaggtggc
ctagatggtcacctgaaaatgttggaagggtatttggaatttttcatgaaacctgaatta
gccaagacttacttaaggttaaagagtgaaatggaggaattgatacagaaaaaacttctg
gatcccaagttggatatacaatcacataatgagcttctttcagctgtaagattgttggta
tcagaggacaattgcgaaggcagatttgttttcggtcgcaaggtccaatcacagttaaag
aaggaagcgaactccaaaagtggtggtggtggtgatggtggtggtgaaggcgagactgat
aattttaaaaatcacctccaaatgttccttaatagggctggacacgactcaccaacatac
aaaacaacgcaactgaaaaacaatcaattccgttctactgtcatatttaatggcttgaat
tttgttggccagccttgcgtcggcaagaaattagcagaaaaatctgctgctgctgaagct
attctatggctaaagggggatactcattcgcctaacaatgatgatattaaccatgcgtct
ttgcttctgaaaaagagcaacaagaaaagtaagaaaaaatcacttaatagtgcgaaatgg
agctga
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integrated database retrieval system
